Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,082,894 – 13,082,998 |
Length | 104 |
Max. P | 0.775905 |
Location | 13,082,894 – 13,082,998 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 94.20 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -26.93 |
Energy contribution | -26.96 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.86 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13082894 104 - 23771897 UAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG .....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60) >DroSec_CAF1 70546 104 - 1 UAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG .....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60) >DroSim_CAF1 66027 104 - 1 UAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG .....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60) >DroEre_CAF1 67242 104 - 1 CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG .....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60) >DroYak_CAF1 69644 104 - 1 CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG .....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60) >DroAna_CAF1 65081 116 - 1 CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCAGGCAAAUUAUAAUUUAUGAAGUCUCUGAUAUCAGGUUGGCUUGCACUUUGCCGUG ....((((((....)))))).(.(((((((((((((((((((.(.(((((....)))))).)))...(((((...)))))))))((((....))))))))...)))))))).)... ( -30.50) >consensus CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU____________GGACUUGCACUUCGGCGUG ....((((((....)))))).(((.((((((.......((((.(.(((((....)))))).))))..............(((((..............))))))))))).)))... (-26.93 = -26.96 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:11 2006