Locus 4545

Sequence ID 3L_DroMel_CAF1
Location 13,082,215 – 13,082,315
Length 100
Max. P 0.796525
window7098

overview

Window 8

Location 13,082,215 – 13,082,315
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 91.00
Mean single sequence MFE -18.18
Consensus MFE -14.34
Energy contribution -15.42
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -1.72
Structure conservation index 0.79
SVM decision value 0.60
SVM RNA-class probability 0.796525
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13082215 100 + 23771897
AUUAGUUGGAUCUUCCAAUUUCCCUCCGUUCCUAAUUUAACUACAAAUUGGUUUUACGGAAAGUUUCACAGAUCAACAGUGGACCACUUCCUCUGUUUUA
........(((((...(((((...(((((..(((((((......)))))))....))))))))))....)))))(((((.(((.....))).)))))... ( -22.10)
>DroSec_CAF1 69853 100 + 1
AUUAGUUGGAUCUUCUAAUUUCCCUCCCUUCCUAAUUUAACUACAAAUUGGUUUUACGGAAAGUUUUACAGAUCAACAGUGGACCACUUCCUCUGUUUUA
........(((((.....(((((........(((((((......)))))))......))))).......)))))(((((.(((.....))).)))))... ( -18.94)
>DroSim_CAF1 65338 100 + 1
AUUAGUUGGAUCUUCCAAUUUCCCUCCCUUCCUAAUUUCACUACAAAUUGGUUUUACGGAAAGUUUCACAGAUCAACAGUGGACCACUUCCUCUGUUUUA
........(((((.....(((((........(((((((......)))))))......))))).......)))))(((((.(((.....))).)))))... ( -18.74)
>DroEre_CAF1 66536 100 + 1
AUUAGUUGGAUCUUCCGAUUGCCCUCCGUUCCUAAUUUCACUACAAAUUGGUUUUACAAAAAGUUUCAAAUAUCAGCAGUGGACCAUUUCCUCUGUUUUU
..(((((((.....)))))))......((..(((((((......)))))))....)).................(((((.(((.....))).)))))... ( -16.30)
>DroYak_CAF1 68938 100 + 1
GUUAGUUGGAUCUUCCGAUUUCCCUCCGUUCCUAAUUACACUACAAAUUGGUUUUACCAAAAGUUUCAUAUGUCAGCAGUGGACCAUUUCCUCUGGUUUU
(..((((((.....))))))..)........................((((.....))))................(((.(((.....))).)))..... ( -14.80)
>consensus
AUUAGUUGGAUCUUCCAAUUUCCCUCCGUUCCUAAUUUCACUACAAAUUGGUUUUACGGAAAGUUUCACAGAUCAACAGUGGACCACUUCCUCUGUUUUA
...((((((.....))))))....(((((..(((((((......)))))))....)))))..............(((((.(((.....))).)))))... (-14.34 = -15.42 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:10 2006