Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,080,376 – 13,080,496 |
Length | 120 |
Max. P | 0.934169 |
Location | 13,080,376 – 13,080,496 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -21.28 |
Energy contribution | -21.84 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.64 |
Structure conservation index | 0.86 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13080376 120 - 23771897 CAUUGAGAUCGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUCCAGCCAAUCAAAAACGAAUUAAAAUUCACAGCGAAUUCAUUUCAAUCACAAAACUCA ...((((.((((((((((((..(((((............))))).(((.......)))........))))))))....((((....))))...)))).)))).................. ( -25.30) >DroSec_CAF1 67967 120 - 1 CUUUGAGAUCGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUCCAGCCAAUCAAAAACGAAUUAAAACUCACAGCGAAUUCAUUUCAACCACAAAACUCA ...((((.((((((((((((..(((((............))))).(((.......)))........))))))))....((........))...)))).)))).................. ( -23.50) >DroSim_CAF1 63459 120 - 1 CAUUGAGAUCGCUUGAUUGGAAGAUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUGCCAGCCAAUCAAAAACGAAUUAAAAUUCACAGCGAAUUCAUUUCAACCACAAAACUCA ...((((.((((((((((((.(((((.....)))))...((((..(((.......))).))))...))))))))....((((....))))...)))).)))).................. ( -26.60) >DroEre_CAF1 64698 120 - 1 CAUUGAGAUUGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUUCAGCCAAUCAAAAACGAAUUAAAAUUCACUGCGAAUUCAUUUCAGUCACAAAACUCA ...((((.((...((((((((((((....))).....(((((((.(((.......)))....................((((....))))))))))).....)))))))))..)).)))) ( -23.90) >DroYak_CAF1 67013 119 - 1 CCUUGAGAUUGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUACCAGCCAAUCCAAAACGUAUUAAAAUUCACAGCGAAUUCAUUUCCAGCACA-AACUCA ...((((..((((.((.((((.(((((.((((.((((.(((.((.((((....................))))...))))).)))))))))))))...))))..)).))))..-..)))) ( -23.85) >consensus CAUUGAGAUCGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUCCAGCCAAUCAAAAACGAAUUAAAAUUCACAGCGAAUUCAUUUCAACCACAAAACUCA ...((((.((((((((((((..(((((............))))).(((.......)))........))))))))....((((....))))...)))).)))).................. (-21.28 = -21.84 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:09 2006