Locus 4543

Sequence ID 3L_DroMel_CAF1
Location 13,073,427 – 13,073,523
Length 96
Max. P 0.601911
window7096

overview

Window 6

Location 13,073,427 – 13,073,523
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 90.68
Mean single sequence MFE -28.16
Consensus MFE -21.02
Energy contribution -23.62
Covariance contribution 2.60
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value 0.14
SVM RNA-class probability 0.601911
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13073427 96 + 23771897
GCUGUUUGUUAAUGCCCUUUCCCCUGGGCUAAGCGAACAGAAUCACGCGGAAACCAGCGGUAAAUGCUCUGACCACGCAAAGUGUAGAUUGCGUCA
.(((((((((...((((........))))..)))))))))(((((((((....)..(((................)))...)))).))))...... ( -29.19)
>DroSec_CAF1 60963 96 + 1
GCUGUUUGUUAAUGCCCUUUCCCCUGGGCUAAGCGAACAGAAUCACGCGGAAACCAGCGGUAAAUGCUCUGACCACUCAAAGUGUUCAUUGCGUCA
.(((((((((...((((........))))..))))))))).....((((....)..)))....((((..(((.(((.....))).)))..)))).. ( -32.10)
>DroSim_CAF1 56763 96 + 1
GCUGUUUGUUAAUGCCCUUUCCCCUGGGCUAAGCGAACAGAAUCACGCGGAAACCAGCGGUAAAUGCUCUGACCACUCAAAGUGUUCAUUGCGUCA
.(((((((((...((((........))))..))))))))).....((((....)..)))....((((..(((.(((.....))).)))..)))).. ( -32.10)
>DroEre_CAF1 57848 91 + 1
GCUGUUUGUUAAUGCCCUUUCCCCUGGGCCA-----UCAGAACCACGCGGAGCCCAGCGGUAAAUGCUCUGACCACUCAAAGUGUCCAUUGCACCA
((((((((.....((((........))))..-----.)))).((....))....))))(((....((..((..(((.....)))..))..))))). ( -23.10)
>DroYak_CAF1 59824 91 + 1
GCUGUUUGUUAAUGCCCUUUCCCCUGGGCUA-----ACAGAAUCACGCGGAAUCCAGCGGUAAAUGCUCUGACCACUCAAAGGUUCCAUUGCACCA
(((((((((((..((((........))))))-----))))).((.....))...))))(((.((((....((((.......)))).))))..))). ( -24.30)
>consensus
GCUGUUUGUUAAUGCCCUUUCCCCUGGGCUAAGCGAACAGAAUCACGCGGAAACCAGCGGUAAAUGCUCUGACCACUCAAAGUGUCCAUUGCGUCA
.(((((((((...((((........))))..)))))))))................(((((..(((((.((......)).)))))..))))).... (-21.02 = -23.62 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:08 2006