Locus 4542

Sequence ID 3L_DroMel_CAF1
Location 13,072,969 – 13,073,066
Length 97
Max. P 0.584539
window7095

overview

Window 5

Location 13,072,969 – 13,073,066
Length 97
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.68
Mean single sequence MFE -29.27
Consensus MFE -20.55
Energy contribution -20.22
Covariance contribution -0.33
Combinations/Pair 1.21
Mean z-score -1.43
Structure conservation index 0.70
SVM decision value 0.10
SVM RNA-class probability 0.584539
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13072969 97 + 23771897
CAUUUUCGGGCUUCGGUUGCAUGUUCCGUCGUGUGCUGAAUGUUGCAUAAAUAAAGCGCAGAUCACACGCAAACAAAGCUGCAGCAGAAACCGUAGC--------------------
......(((..(((.((((((.(((..((.(((((.(((.(((.((.........)))))..))))))))..))..))))))))).))).)))....-------------------- ( -26.50)
>DroPse_CAF1 51911 104 + 1
CAUUUUCG-GCUCUGGUUGCAUGUUUCGUCGUGUGCUGAAUGUUGCAUAAAUAAAGCGCAGAUCACACGCAAACAAAGCUCCAGCUACAGCUACAGCUACAG------------CUA
.......(-(((.((.((((.(((...(((.((((((...((((.....)))).))))))))).))).)))).)).))))..((((..(((....)))..))------------)). ( -28.90)
>DroGri_CAF1 82909 115 + 1
CAAUUUCGGCAA-U-GUUGCAUGUUUCGUCGUGUGCUGAAUGUUGCAUAAAUAAACUGCAGAUCACACGCAAACAAAGCUGAAGCUAAGGCUGUAGAUGUGGCUGUAGCGGUAGCUG
........(((.-.-..))).(((((.(.(((((((((...(((.........)))..)))..)))))))))))).(((((..((((.(((..(....)..))).))))..))))). ( -34.40)
>DroEre_CAF1 57388 97 + 1
CAUUUUCGGGCUUCGGUUGCAUGUUUCGUCGUGUGCUGAAUGUUGCAUAAAUAAAGCGCAGAUCACACGCAAACAAAGCUGCAGCAGAAACCGUAGC--------------------
......(((..(((.((((((.((((.((.(((((.(((.(((.((.........)))))..))))))))..)).)))))))))).))).)))....-------------------- ( -28.20)
>DroYak_CAF1 59359 97 + 1
CAUUUUCGGGCUUCGGUUGCAUGUUUCGUCGUGUGCUGAAUGUUGCAUAAAUAAAGCGCAGAUCACACGCAAACAAAGCUGGAGCAGAAACCGUAGC--------------------
...((((..(((((((((...(((((.(.(((((((((...(((..........))).)))..)))))))))))).))))))))).)))).......-------------------- ( -28.70)
>DroPer_CAF1 27013 104 + 1
CAUUUUCG-GCUCUGGUUGCAUGUUUCGUCGUGUGCUGAAUGUUGCAUAAAUAAAGCGCAGAUCACACGCAAACAAAGCUCCAGCUACAGCUACAGCUACAG------------CUA
.......(-(((.((.((((.(((...(((.((((((...((((.....)))).))))))))).))).)))).)).))))..((((..(((....)))..))------------)). ( -28.90)
>consensus
CAUUUUCGGGCUUCGGUUGCAUGUUUCGUCGUGUGCUGAAUGUUGCAUAAAUAAAGCGCAGAUCACACGCAAACAAAGCUGCAGCAAAAACCGUAGC____________________
.........(((.(((((((.(((...(((.((((((...((((.....)))).))))))))).))).)).......((....))...))))).))).................... (-20.55 = -20.22 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:07 2006