Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,320,947 – 1,321,067 |
Length | 120 |
Max. P | 0.531712 |
Location | 1,320,947 – 1,321,067 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.11 |
Mean single sequence MFE | -51.78 |
Consensus MFE | -32.65 |
Energy contribution | -34.65 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.32 |
Mean z-score | -1.43 |
Structure conservation index | 0.63 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1320947 120 + 23771897 AGCCCUGCCAACAGGAAUGGCCAUCGGAGCCGUGCUGGAGCGAGAAGAUGCGCGGGACGCCCUCGUUCUGCGGGAGAACUUCAAGGGCCACACGAUAGCCUCGCUUCCAAAGGGCAGCGU .((.(((((....((((.(((.((((..(((.(((....))).((((.(.(((((((((....))))))))).)....))))...)))....)))).)))....))))....))))).)) ( -45.50) >DroVir_CAF1 2707 120 + 1 AGCGCUGCCAACGGGAAUGGCUGUGGGCGCGGUGCUGGAGCGUGAGGAUGCCCGCGAUGCGCUGGUGCUGCGCGAGAAUCUGAAGGGGCACACGAUUGCCACGCUGCCCAAGGGCAGUGU .((((((((...(((...(((.((((((((((..(..(.(((((.((....)).).)))).)..)..))))))...((((((........)).)))).))))))).)))...)))))))) ( -57.40) >DroGri_CAF1 1313 120 + 1 GGCGCUGCCCACGGGCAUGGCUGUCGGUGCGGUACUGGAGCGUGAGGAUGCCCGGGAUGCGCUGGUGCUGCGCGAGAAUCUAAAGGGUCACACAAUAGCCAACCUGCCUAAGGGCAGUGU .(((((((((..((((((((((((.((((((((((..(.((((..((....))...)))).)..)))))))))..((..(....)..))...).)))))))...)))))..))))))))) ( -61.10) >DroMoj_CAF1 2212 120 + 1 AGCGCUGCCAACGGGCAUGGCUGUGGGCGCGGUGCUGGAACGUGAGGAUGCUCGGGAUGCGUUGGUGCUGCGCGAGCAUCUUAAGGGUCACACCAUUGCAUCGCUGCCCAAAGGCAGUGU .((((((((.((((......))))((((((((((((((...(((((((((((((.(..(((....)))..).)))))))))......)))).)))..))))))).))))...)))))))) ( -59.70) >DroAna_CAF1 1507 120 + 1 GGCGCUGCCGACUGGAAUGGCCAUUGGAGCCGUCCUGGAGCGUGAAGAUGCCCGAGAUGCACUGGUGCUCCGUGAGAACUUCAAGGGCCACACGAUAGCCUCACUGCCCAAUGGAAGUGU .(((((.(((..(((..(((((.((((((...((.(((((((...((.(((.......)))))..))))))).))...)))))).))))).......((......))))).))).))))) ( -40.40) >DroPer_CAF1 1674 120 + 1 GGCUCUACCGACGGGCAUGGCCAUUGGGGCAGUCCUAGAGCGAGAGGAUGCCCGGGAUGCUCUGGUUCUGCGCGAGAACUUCCAGGGCCAUACGAUAGCCUCUCUGCCACAAGGAAGUGU .((.((.((....((((.(((.(((((((((.((((........))))))))).....(((((((.....(....).....)))))))....)))).)))....))))....)).)).)) ( -46.60) >consensus AGCGCUGCCAACGGGAAUGGCCAUCGGAGCGGUGCUGGAGCGUGAGGAUGCCCGGGAUGCGCUGGUGCUGCGCGAGAACCUCAAGGGCCACACGAUAGCCUCGCUGCCCAAGGGCAGUGU .((((((((....((((.(((.((((..((((((((((.((((..((....))...)))).))))))))))....(..((....))..)...)))).)))....))))....)))))))) (-32.65 = -34.65 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006