Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,059,905 – 13,060,008 |
Length | 103 |
Max. P | 0.814909 |
Location | 13,059,905 – 13,060,008 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -18.28 |
Energy contribution | -18.52 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.20 |
Mean z-score | -1.82 |
Structure conservation index | 0.79 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13059905 103 + 23771897 AUCCCCAAAAACAAAUUGUUAAAAAGAUUAUGUCAUGCCGAAGGAAAAAUAAAGGAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUGCGCUCUCUG-CCAUC .(((.....(((.....))).....(((...)))........))).......(((((((((((((((......)))))))))))))))(.((.....)-))... ( -19.10) >DroSec_CAF1 47602 103 + 1 AUCGCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAGGAAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUUCGCUCUCUG-GCAUC ..................................((((((((((.......((((((((((((((((......))))))))))))))))...))))))-)))). ( -30.20) >DroSim_CAF1 43402 103 + 1 AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAAGAAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUUCGCUUUCUG-GCAUC ..................................((((((((((.......((((((((((((((((......))))))))))))))))...))))))-)))). ( -28.10) >DroEre_CAF1 44356 101 + 1 AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUA-GGGAA-AAAACGAGAGGAAAAUGUUGUUUUCUUUUUGCGCUCUUUG-GCAUC ..................................((((((((((.....((-((((.-(((((((.(......).))))))).))))))...))))))-)))). ( -18.10) >DroYak_CAF1 46159 103 + 1 AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAAGGAA-AAAACGAGAGGAAAAUGUUGUUUUCUUUUUGCGCUCUUUGGGCAUC ..................................(((((.(((((.....(((((((-(..((((.(......).)))))))))))).....))))).))))). ( -20.20) >consensus AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAAGGAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUGCGCUCUCUG_GCAUC ..................................((((((((((........(((((((((((((((......)))))))))))))))....)))))).)))). (-18.28 = -18.52 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:59 2006