Locus 4538

Sequence ID 3L_DroMel_CAF1
Location 13,057,170 – 13,057,261
Length 91
Max. P 0.701906
window7085

overview

Window 5

Location 13,057,170 – 13,057,261
Length 91
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 87.52
Mean single sequence MFE -15.31
Consensus MFE -13.58
Energy contribution -13.50
Covariance contribution -0.08
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.89
SVM decision value 0.35
SVM RNA-class probability 0.701906
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13057170 91 + 23771897
AUGCAGUUGAUGUUUUUUACCAGACUGCAAUAUUUUA---UUAUUUCUCUUUUUU--GC------GCUCUGCUUUGCUUUGUUCCACCCCUCUGGAUAUAAA---
.(((((((...((.....))..)))))))........---...............--..------((........)).((((((((......)))).)))).--- ( -14.10)
>DroSec_CAF1 44864 91 + 1
AUGCAGUUGAUGUUUUUUACCAGACUGCAAUGUUUUA---UUAUUUCUCUUUUUU--GC------GCUCUGCUUUGCUUUGUUCCACCCCUCUGGAUAUAAA---
.(((((((...((.....))..)))))))........---...............--..------((........)).((((((((......)))).)))).--- ( -14.10)
>DroSim_CAF1 40691 91 + 1
AUGCAGUUGAUGUUUUUUACCAGACUGCAAUAUUUUA---UUAUUUCUGUUUUUU--GC------GCUCUGCUUUGCUUUGUUCCACCCCUCUGGAUAUAAA---
.(((((((...((.....))..)))))))........---...............--..------((........)).((((((((......)))).)))).--- ( -14.10)
>DroEre_CAF1 41708 90 + 1
AUGCAGUUGAUGUUUUUUACCAGACUGCAAUAUUUUA---UUAUUUCCUU-UUUU--GC------GCUCCGCUCUGCUUUGUUCCACCCCUCUGGACACAAA---
.(((((((...((.....))..)))))))........---..........-....--((------(...)))......((((((((......)))).)))).--- ( -16.00)
>DroYak_CAF1 43364 98 + 1
AUGCAGUUGAUGUUUUUUACCAGACUGCAAUAUUUUA---UUAUUUCCCU-UUUUUUGCUUUGCUGCUCUGCUUUGCUUUGUUCCACCCCUCUGGAUACAAA---
.(((((((...((.....))..)))))))........---..........-......((...((......))...)).((((((((......)))).)))).--- ( -18.70)
>DroAna_CAF1 40117 91 + 1
AUGCAGUUGAUGUUUUUUACCAGACUGCAAAAUUUUCAGCUUAU-UCUGUUUUUU--A-----------UGCUUUGCUUUGUUCCACCCCUCAGGACACAAAAAA
.(((((((...((.....))..)))))))........(((....-..........--.-----------.)))....((((((((........))).)))))... ( -14.89)
>consensus
AUGCAGUUGAUGUUUUUUACCAGACUGCAAUAUUUUA___UUAUUUCUCUUUUUU__GC______GCUCUGCUUUGCUUUGUUCCACCCCUCUGGAUACAAA___
.(((((((...((.....))..)))))))................................................(((((((((......)))).)))))... (-13.58 = -13.50 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:58 2006