Locus 4537

Sequence ID	3L_DroMel_CAF1
Location	13,055,900 – 13,055,992
Length	92
Max. P	0.638233

overview

Window 4

Location	13,055,900 – 13,055,992
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	91.16
Mean single sequence MFE	-22.02
Consensus MFE	-19.62
Energy contribution	-19.82
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.24
Structure conservation index	0.89
SVM decision value	0.22
SVM RNA-class probability	0.638233
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13055900 92 - 23771897
GUCCCUUUAUUUUUUGCACAGCGAUAUGAGCGAUAUGGCUCAAGGACAUUCCAGGAAAUGACAAGGGACACACACACACACACAAACGCUGU
(((((((((((((((...........(((((......))))).((.....)))))))))))..))))))....................... ( -23.20)
>DroSec_CAF1 43597 86 - 1
GUCCCUUU----UUUGCACAGCGAUAUGAGCGAUAUGGCUCAAGGACAUUCCAGGAAAUGACAAGGGACACACACACACACAC--AAGCUGU
(((((((.----(((.(.........(((((......))))).((.....)).).)))....)))))))..............--....... ( -20.50)
>DroSim_CAF1 39449 85 - 1
GUCCCUUU---UUUUGCACAGCGAUAUGAGCGAUAUGGCUCAAGGACAUUCCAGGAAAUGACAAGGGACACACGCACACAA----GCGCUGU
(((((((.---.(((.(.........(((((......))))).((.....)).).)))....)))))))((((((......----))).))) ( -25.20)
>DroEre_CAF1 40356 87 - 1
GUCCCUUU---UUUUGCACAGCGAUAUGAGCGAUAUGGCUCAAGGACAUUCCAGGAAAUGCCAACGGACACACACACACACC--AACGCUGU
........---......((((((...(((((......))))).((.((((......))))))....................--..)))))) ( -19.50)
>DroYak_CAF1 42068 86 - 1
GUCCCUUU--UUUUUGCAGAGCAAUAUGAGCGAUAUGGCUCAAGGACAUUCCAGGAAAUGACAAGGGACACACACACACA----AGCGCUGU
((((((((--(.(((.(.((((.((((.....)))).))))..((.....)).).))).)).)))))))...........----........ ( -21.70)
>consensus
GUCCCUUU___UUUUGCACAGCGAUAUGAGCGAUAUGGCUCAAGGACAUUCCAGGAAAUGACAAGGGACACACACACACAC___AACGCUGU
(((((((.....(((.(.........(((((......))))).((.....)).).)))....)))))))....................... (-19.62 = -19.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:57 2006