| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,055,751 – 13,055,845 |
| Length | 94 |
| Max. P | 0.577722 |
| Location | 13,055,751 – 13,055,845 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.23 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -18.61 |
| Energy contribution | -18.81 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13055751 94 + 23771897 UCGCCAUUGUUCGACAUUAAUUGCACUUUUCCAACCGAGUGCGUGUCCUUGCUGGUGGCCCGC----------------CGUCACAGGGAUAAGUCAAAUUAAUGCUC-CA ............((((((((((((((((........)))))).((((((((.((..((....)----------------)..)))))))))).....)))))))).))-.. ( -29.80) >DroPse_CAF1 34635 85 + 1 UCGCCAUUGUUUGACAUUAAUUGCACUUUUCCAGCUGAGUGCGUGUCCUUGCUGCUG------------------------UCCCA-GGAUAAGUCAAAUUAAUGUUC-CA ....(((((((((((.......((((((........)))))).((((((.((....)------------------------)...)-))))).)))))).)))))...-.. ( -22.90) >DroSec_CAF1 43448 94 + 1 UCGCCAUUGUUCGACAUUAAUUGCACUUUUCCAACCGAGUGCGUGUCCUUGCUGGUGGCCCGU----------------CGUCCCAGGGAUAAGUCAAAUUAAUGCUC-CA ............((((((((((((((((........)))))).(((((...((((.(((....----------------.)))))))))))).....)))))))).))-.. ( -25.10) >DroEre_CAF1 40191 110 + 1 UCGCCAUUGUUCGACAUUAAUUGCACUUUUCCAACCGAGUGCGUGUCCUUGCUGCUGGCCCGCUGUCCCGCUGUCCCGCUGUCCCAGGGAUAAGUCAAAUUAAUGCUC-CA ............((((((((((((((((........)))))).((((((((..((.((.(.((......)).).)).)).....)))))))).....)))))))).))-.. ( -28.70) >DroYak_CAF1 41911 102 + 1 UCGCCAUUGUUCGACAUUAAUUGCACUUUUCCAACCGAGUGCGUGUCCUUGCUGUUGGCCCGCUGUC--------CCGCUGUCCCAGGGAUAAGUCAAAUUAAUGCUC-CA ..((((..((..(((((.....((((((........)))))))))))...))...))))..((((((--------((.........))))).))).............-.. ( -25.60) >DroAna_CAF1 38816 83 + 1 UCGCCAUUGUUUGACAUUAAUUGCACUUUACCAGCUGAGUGCGUGUCCUUGCUG---------------------------U-CCCGGGACAAGUUAAAUUAAUGUUCGCA ..(((((((((((((.......((((((........)))))).((((((.(...---------------------------.-.).)))))).)))))).)))))...)). ( -23.10) >consensus UCGCCAUUGUUCGACAUUAAUUGCACUUUUCCAACCGAGUGCGUGUCCUUGCUGCUGGCCCGC_________________GUCCCAGGGAUAAGUCAAAUUAAUGCUC_CA ............((((((((((((((((........)))))).((((((((.................................)))))))).....)))))))).))... (-18.61 = -18.81 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:56 2006