Locus 4534

Sequence ID 3L_DroMel_CAF1
Location 13,053,600 – 13,053,719
Length 119
Max. P 0.565639
window7080

overview

Window 0

Location 13,053,600 – 13,053,719
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 94.34
Mean single sequence MFE -26.24
Consensus MFE -22.54
Energy contribution -22.46
Covariance contribution -0.08
Combinations/Pair 1.14
Mean z-score -1.25
Structure conservation index 0.86
SVM decision value 0.06
SVM RNA-class probability 0.565639
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13053600 119 + 23771897
GUUAAGACUUCUCUGCAGGUAAGCCAUCCAUCCGACUAUUUACCAUAAUUCUGAUUGAUUCUCCCGGAGAUUUUCACAAAAGUUGUCUCAGCCUCCAGGCGUCCAGCUACCGUCUUACU
..((((((.((((((..((((((...((.....))...)))))).....((.....))......))))))..........(((((.....(((....)))...)))))...)))))).. ( -24.80)
>DroSec_CAF1 41303 115 + 1
GUUGAGACUUCUCUGCAGGUAAGCCA----UCCGACUACUUACCAUAAUUCUGAUUGAUUCUCCCGGAGAUUUUCACAAAAGUUGUCUCAGCCUCCAGGCAUCCAGCUACCGUCUUACU
..((((((.((((((..((((((...----........)))))).....((.....))......))))))..........(((((.....(((....)))...)))))...)))))).. ( -25.50)
>DroSim_CAF1 37160 115 + 1
GUUGAGACUUCUCUGCAGGUAAGCCA----UCCGACUACUUACCAUAAUUCUGAUUGAUUCUCCCGGAGAUUUUCACAAAAGUUGUCUCAGCCUCCAGGCGUCCAGCUACCGUCUUACU
..((((((.((((((..((((((...----........)))))).....((.....))......))))))..........(((((.....(((....)))...)))))...)))))).. ( -26.60)
>DroEre_CAF1 37931 115 + 1
GUUGGGACUUCUCUGCAGGUAAGCCA----UCCGACCACUUACCAUAAUUCUGAUUGAUUCUCCCGGAGAUUUUCACAAAAGUUGUCUCAGCCUCCAGGCUUCCAGCUACCGUCUUACU
..((((((.((((((..((((((...----........)))))).....((.....))......))))))..........(((((....((((....))))..)))))...)))))).. ( -26.40)
>DroYak_CAF1 39621 115 + 1
GUUGGGACUUUACUGCAGGUAAACCA----UCUGACUACUUACCAUAAUUCUGAUUGAUUCUCCCGGAGAUUUUCACAAAAGUGGUCUCAGCCUCCAGGCUCCCAGCUACCGUCUUACU
(((((((.(((((.....)))))...----...((((((((..((......))..(((.((((...))))...)))...))))))))...(((....))))))))))............ ( -27.90)
>consensus
GUUGAGACUUCUCUGCAGGUAAGCCA____UCCGACUACUUACCAUAAUUCUGAUUGAUUCUCCCGGAGAUUUUCACAAAAGUUGUCUCAGCCUCCAGGCGUCCAGCUACCGUCUUACU
..((((((.((((((..((((((...............)))))).....((.....))......))))))..........(((((.....(((....)))...)))))...)))))).. (-22.54 = -22.46 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:54 2006