Locus 4533

Sequence ID 3L_DroMel_CAF1
Location 13,052,672 – 13,052,775
Length 103
Max. P 0.567927
window7079

overview

Window 9

Location 13,052,672 – 13,052,775
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -32.82
Consensus MFE -23.96
Energy contribution -24.08
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.89
Structure conservation index 0.73
SVM decision value 0.07
SVM RNA-class probability 0.567927
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13052672 103 - 23771897
AUGAUUAAUUGCCAUCCUUGUUAGUGCAAGGAUACCAUGGGAAGGAAAUGGGUUU-UUUCUUCUCGGUAGCUGGCAAUCGGCAAAGGAUCUGAAGGAGCCGUGG
.((.(..((((((((((((((....)))))))((((..((((((((((......)-)))))))))))))..)))))))..)))..((.((.....)).)).... ( -35.90)
>DroSec_CAF1 40382 104 - 1
AUGAUUAAUUGCCAUCCUUGUUAGUGCGAGGAUACCAUGGGAAGGAAAUGGGUUUUUUUCUUCUCGGUAGCUGGCAAUCGGCAAAGGAGCUGAAGGAGCCGUGG
........(((((((((((((....)))))))((((..((((((((((.......))))))))))))))..))))))(((((......)))))........... ( -35.80)
>DroSim_CAF1 36223 104 - 1
AUGAUUAAUUGCCAUCCUUGUUAGUGCGAGGAUACUUUGGGAAGGAAAUGGGUUUUUUUCUUCUCGGUAGCUGGCAAUCGGCAAAGGAGCUGAAGGAGCCGUGG
........(((((((((((((....)))))))).....((((((((((.......)))))))))))))))..(((..(((((......)))))....))).... ( -35.50)
>DroEre_CAF1 36879 103 - 1
AUGAUUAAUUGCCAUCCUUGUUAGUGGGAGCGUACCAUGGGAAGGAAAUGGGUUU-UUUAUCCUUGUGAGCUGGCAAUCGGCGAAGGAUCUGAAGGAGCCGUGC
..............(((((.(((.(((.......)))))).))))).((((.(((-(((((((((....((((.....)))).))))))..)))))).)))).. ( -28.20)
>DroYak_CAF1 38472 103 - 1
AUGAUUAAUUGCCAUCCUUGUUAGUGCGAGGAUACCAUGGGAAGGAAAUGGGUUU-UUUCUUUUUGUUCGCUCGCAAUCGGCAAAGGAUCUGAAGGAGCUGUGG
..((((..(((((((((((((....))))))))...((..((((((((......)-)))))))..))............)))))..)))).............. ( -28.70)
>consensus
AUGAUUAAUUGCCAUCCUUGUUAGUGCGAGGAUACCAUGGGAAGGAAAUGGGUUU_UUUCUUCUCGGUAGCUGGCAAUCGGCAAAGGAUCUGAAGGAGCCGUGG
.......((((((((((((((....))))))))....((((((((((.........))))))))))......))))))((((...............))))... (-23.96 = -24.08 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:53 2006