Locus 4531

Sequence ID 3L_DroMel_CAF1
Location 13,049,997 – 13,050,093
Length 96
Max. P 0.794681
window7076

overview

Window 6

Location 13,049,997 – 13,050,093
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 89.52
Mean single sequence MFE -31.75
Consensus MFE -25.58
Energy contribution -26.38
Covariance contribution 0.80
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.81
SVM decision value 0.60
SVM RNA-class probability 0.794681
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13049997 96 + 23771897
GUGGCAACCAACCACAUUUUUCUGAGUGCUCUUAGCUUGGCUAUUUGCCAGUAGCCGUUUGGCCAGGCUAUCAGGCUGAUCAGUUCGCUUGGUGGA
(.(....))..((((......((((..(((..(((((((((((..((.(....).))..)))))))))))...)))...))))........)))). ( -33.24)
>DroSec_CAF1 37745 95 + 1
GUGGUAACCAACCACAUUUUUCUGAGUGCUCUUGUCUUGGCUAUUUGCCAGUAGCUU-UUGGCCAGGCUAUCAGGCUGAUCAGCUCGCUUGGUGGA
(((((.....)))))....................((((((((...((.....))..-.))))))))(((((((((.((.....))))))))))). ( -30.20)
>DroSim_CAF1 33607 95 + 1
GUGGUAACCAACCACAUUUUUCUGAGUGCUCUUGGCUUGGCUAUUUGCCAGUAGCUG-UUGGCCCGGCUAUCAGGCUGAUCAGCUCGCUUGGUGGA
(((((.....)))))......(((.(.(((..(((((((((.....))))..)))))-..)))))))(((((((((.((.....))))))))))). ( -33.40)
>DroEre_CAF1 34222 95 + 1
GUGGUGACAAACCACAUUUCUCUGAGUGCACUUAGCGUGGCUAUUUGCCAGUAGCUG-UUGGCCAGGCUAUCGGGCGGAUCAGCUGGCUUGGUGGA
(((((.....))))).............((((.(((.((((((((((((.((((((.-.......))))))..))))))).)))))))).)))).. ( -36.20)
>DroYak_CAF1 35821 95 + 1
ACCAUUACAAACCACAUUUUUCUGAGUGCACUUAACUUGGCUAUUUGCCAGUAGCUG-UUGGCCAGGCUAUCAGGCUGAUAUGCUCGCUUGGUGGA
..............(((((....))))).......((((((((...((.....))..-.))))))))(((((((((.((.....))))))))))). ( -25.70)
>consensus
GUGGUAACCAACCACAUUUUUCUGAGUGCUCUUAGCUUGGCUAUUUGCCAGUAGCUG_UUGGCCAGGCUAUCAGGCUGAUCAGCUCGCUUGGUGGA
...........((((......((((..((.(((((((((((((...((.....))....)))))))))))..))))...))))........)))). (-25.58 = -26.38 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:50 2006