Locus 4530

Sequence ID 3L_DroMel_CAF1
Location 13,048,317 – 13,048,408
Length 91
Max. P 0.851763
window7074 window7075

overview

Window 4

Location 13,048,317 – 13,048,408
Length 91
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 93.43
Mean single sequence MFE -29.67
Consensus MFE -25.73
Energy contribution -25.73
Covariance contribution 0.01
Combinations/Pair 1.11
Mean z-score -2.44
Structure conservation index 0.87
SVM decision value 0.79
SVM RNA-class probability 0.851763
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13048317 91 + 23771897
AUUAGCCGGACUCGGUGCUG-GACUGGUUUUUGGGAUCUGAGUAUACUGGAUAUACUGAGAUACUCAGUUUUGAGCCUGGUUUUCAUUUGGU
...((((((.(((((.((((-(.((.(....).))((((.((((((.....)))))).))))..))))).))))).)))))).......... ( -26.70)
>DroSec_CAF1 36079 90 + 1
AUUAGCCGGACUCGGUGCUGGGACUGGUUUUUGGGAUCUGGGU--ACUGGGUAUACUGGGAUACUCAGUUUUGAGCCUGGUUUUGGUUUGGU
....(((((((.(((.((..((.((.(...(((((((((.(((--(.......)))).)))).)))))...).))))..)).)))))))))) ( -31.50)
>DroSim_CAF1 31766 90 + 1
AUUAGCCGGACUCGGUGCUGGGACUGGUUUUUGGGAUCUGGGU--ACUGGGUAUACUGGGAUACUCAGCUUUGAGCCUGGUUUUGGUUUGGU
....(((((((.(((.((..((.((.(...(((((((((.(((--(.......)))).)))).)))))...).))))..)).)))))))))) ( -30.80)
>consensus
AUUAGCCGGACUCGGUGCUGGGACUGGUUUUUGGGAUCUGGGU__ACUGGGUAUACUGGGAUACUCAGUUUUGAGCCUGGUUUUGGUUUGGU
...((((((.(((((.((((((......(((..(.((((((.....))))))...)..)))..)))))).))))).)))))).......... (-25.73 = -25.73 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 13,048,317 – 13,048,408
Length 91
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 93.43
Mean single sequence MFE -15.57
Consensus MFE -14.04
Energy contribution -13.60
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -2.00
Structure conservation index 0.90
SVM decision value 0.50
SVM RNA-class probability 0.761696
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13048317 91 - 23771897
ACCAAAUGAAAACCAGGCUCAAAACUGAGUAUCUCAGUAUAUCCAGUAUACUCAGAUCCCAAAAACCAGUC-CAGCACCGAGUCCGGCUAAU
............((.(((((....((((((((((..........)).)))))))).............(..-...)...))))).))..... ( -17.40)
>DroSec_CAF1 36079 90 - 1
ACCAAACCAAAACCAGGCUCAAAACUGAGUAUCCCAGUAUACCCAGU--ACCCAGAUCCCAAAAACCAGUCCCAGCACCGAGUCCGGCUAAU
............((.(((((...((((.((((......)))).))))--...................((....))...))))).))..... ( -14.50)
>DroSim_CAF1 31766 90 - 1
ACCAAACCAAAACCAGGCUCAAAGCUGAGUAUCCCAGUAUACCCAGU--ACCCAGAUCCCAAAAACCAGUCCCAGCACCGAGUCCGGCUAAU
............((.(((((...((((.((((......)))).))))--...................((....))...))))).))..... ( -14.80)
>consensus
ACCAAACCAAAACCAGGCUCAAAACUGAGUAUCCCAGUAUACCCAGU__ACCCAGAUCCCAAAAACCAGUCCCAGCACCGAGUCCGGCUAAU
............((.(((((...((((.((((......)))).)))).....................((....))...))))).))..... (-14.04 = -13.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:49 2006