| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,320,668 – 1,320,759 |
| Length | 91 |
| Max. P | 0.565395 |
| Location | 1,320,668 – 1,320,759 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 79.89 |
| Mean single sequence MFE | -10.65 |
| Consensus MFE | -7.50 |
| Energy contribution | -8.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1320668 91 - 23771897 UAUUUAUCUUACUAAAUAUUUAACUUUGAUAAGCGAUUUCAUAUUCAUUAUCGUACACAAUUUACUUCUUCUGA--CCUCAGAAAUUGUACCC ((((((......)))))).........(((((..((........)).)))))(((((...........(((((.--...)))))..))))).. ( -10.12) >DroSec_CAF1 1199 91 - 1 UAUUUAUCUUAUUAAAUAUUUAACUUUGAUAAGCGAUUUCAUAUUCAUUAUCGUAAACAAUUUACUUCUUCUGA--CCUCAGAAAUGGUACCC .......(((((((((........)))))))))((((............)))).........((((..(((((.--...)))))..))))... ( -13.50) >DroSim_CAF1 1205 91 - 1 UAUUUAUCUUAUUAAAUAUUUAACUUUGAUAAGCGACUUCAUAUUCAUUAUCGUAAACAAUUUACUUCUUCUGA--CCUCAGAAAUGGCACCC .......(((((((((........)))))))))...........(((((...((((.....))))....((((.--...)))))))))..... ( -10.60) >DroYak_CAF1 1194 79 - 1 --CUUAUCUUACUAAAUAUUUAAGUUUGAUAGG------------CGAUAUCUUCAUUACUUGACCCCUUCUGAACCCUCGUAAAUGGUACAC --((((((..(((.........)))..))))))------------................(((((..((.(((....))).))..))).)). ( -8.40) >consensus UAUUUAUCUUACUAAAUAUUUAACUUUGAUAAGCGAUUUCAUAUUCAUUAUCGUAAACAAUUUACUUCUUCUGA__CCUCAGAAAUGGUACCC .......(((((((((........))))))))).............................((((..((((((....))))))..))))... ( -7.50 = -8.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:10 2006