Locus 4529

Sequence ID 3L_DroMel_CAF1
Location 13,046,733 – 13,046,834
Length 101
Max. P 0.995320
window7073

overview

Window 3

Location 13,046,733 – 13,046,834
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 97.04
Mean single sequence MFE -24.47
Consensus MFE -24.18
Energy contribution -23.94
Covariance contribution -0.25
Combinations/Pair 1.11
Mean z-score -1.43
Structure conservation index 0.99
SVM decision value 2.56
SVM RNA-class probability 0.995320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13046733 101 + 23771897
GCUAAUCACUGUUCUCGGGAGGCGAAUCCAACUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGU-UUAUUUCGUCUUGUUUGUGCGCAACCC
((......(((....)))((((((((.......((((......(((((((((((...))))))))))).)))).-....))))))))........))..... ( -24.50)
>DroSec_CAF1 34489 101 + 1
GCUAAUCACUGUUCUCGGGAGGCGAAUCCAACUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGU-UUAUUUCGUCUUGUUUGUGCGCAACCC
((......(((....)))((((((((.......((((......(((((((((((...))))))))))).)))).-....))))))))........))..... ( -24.50)
>DroSim_CAF1 30171 101 + 1
GCUAAUCACUGUUCUCGGGAGGCGAAUCCAACUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGU-UUAUUUCGUCUUGUUUGUGCGCAACCC
((......(((....)))((((((((.......((((......(((((((((((...))))))))))).)))).-....))))))))........))..... ( -24.50)
>DroEre_CAF1 30694 101 + 1
GCUAAUCACUGUUCUCGGGAGGCGAGUUCAGCUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGU-UUAUUUCGUCUUGUUUGUGCGCAACCC
((......(((....)))((((((((.......((((......(((((((((((...))))))))))).)))).-....))))))))........))..... ( -24.20)
>DroYak_CAF1 32210 101 + 1
GCUAAUCACUGUUCUCGGGAGGCGAAUCCAACUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGU-UUAUUUCGUCUUGUUUGUGCGCAACCC
((......(((....)))((((((((.......((((......(((((((((((...))))))))))).)))).-....))))))))........))..... ( -24.50)
>DroAna_CAF1 29979 102 + 1
GCUAAUCACCAUUCUCGGGAGGCGAAUCCAACUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGUUUUAUUUCGUCUUGUUUGCGUACAACCC
((......((......))((((((((.......((((......(((((((((((...))))))))))).))))......))))))))....))......... ( -24.62)
>consensus
GCUAAUCACUGUUCUCGGGAGGCGAAUCCAACUCCAAUUACAUUUAAAUGCCAUGAAAUGGUAUUUGAUUUGGU_UUAUUUCGUCUUGUUUGUGCGCAACCC
((......(((....)))((((((((.......((((......(((((((((((...))))))))))).))))......))))))))......))....... (-24.18 = -23.94 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:47 2006