Locus 4527

Sequence ID 3L_DroMel_CAF1
Location 13,040,449 – 13,040,550
Length 101
Max. P 0.811801
window7071

overview

Window 1

Location 13,040,449 – 13,040,550
Length 101
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -22.82
Consensus MFE -14.09
Energy contribution -14.57
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 0.65
SVM RNA-class probability 0.811801
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13040449 101 - 23771897
CAAAGCCACGCUCACUUUGCAUAUGCCAAGCCGCAGGUAUGCACAGUGGGGCAAAAGAUAUAC-AUAAAUAGGCAUA------UUUCAAAAU------AUGUUAAAAACGGACA
....(((..(((((((.(((((((((......)))..)))))).))).))))...........-.......((((((------((....)))------)))))......)).). ( -24.00)
>DroSec_CAF1 23951 101 - 1
CAAAGCCACGCUCACUUUGCAUAUGCCAAGCCGCAGGUAUGCACAGUGGGACAAAAGAUAUAC-AUACAUAGGCAUA------UUUAAGAAC------AUGUCAAAAACGGACA
....(((..(((((((.(((((((((......)))..)))))).)))))).)......(((..-....))))))...------.........------.((((.......)))) ( -22.90)
>DroEre_CAF1 24491 95 - 1
CAAAGCCACGCUCACUUUGCAUAUGCCAAGCCGCAGGUAUGCACAGUGGGACAAAACUUA-GC-AU-----GGCACA------CUUAAAAAC------AUGUCCAAAACGGAAA
....((((.(((((((.(((((((((......)))..)))))).))))...........)-))-.)-----)))...------.........------...(((.....))).. ( -23.60)
>DroYak_CAF1 25805 94 - 1
CAAAGCCACGCUCACUUUGCAUAUGCCAAGCCGCAGGUAUGCACAGUGGGACAAAACUUG-GC-AU-----GACAUA------GUUAAAAAC-------UGGCCCAAACGGAUA
....((((.(((((((.(((((((((......)))..)))))).)))))).)..((((((-..-..-----..)).)------)))......-------))))((....))... ( -24.90)
>DroAna_CAF1 23818 114 - 1
CAAAGCUGAGCUCACUUUGCAUAUGCCAGGCAGAAGGUAUGGACAGUGGUUGGAAAUAUAGAGAAUAAUUUAACAAAUUUUAACUUAAAAACUAGAAUUUGUACAAAAUAGAGA
(((.((((.((.......)).((((((........))))))..))))..)))....................((((((((((..........))))))))))............ ( -18.70)
>consensus
CAAAGCCACGCUCACUUUGCAUAUGCCAAGCCGCAGGUAUGCACAGUGGGACAAAACAUA_AC_AUA__U_GGCAUA______CUUAAAAAC______AUGUCCAAAACGGACA
.....((...((((((.(((((..(((........)))))))).)))))).....................(((((......................)))))......))... (-14.09 = -14.57 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:45 2006