Locus 4526

Sequence ID 3L_DroMel_CAF1
Location 13,038,940 – 13,039,041
Length 101
Max. P 0.965898
window7070

overview

Window 0

Location 13,038,940 – 13,039,041
Length 101
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -29.16
Consensus MFE -20.48
Energy contribution -20.23
Covariance contribution -0.25
Combinations/Pair 1.10
Mean z-score -2.49
Structure conservation index 0.70
SVM decision value 1.59
SVM RNA-class probability 0.965898
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13038940 101 - 23771897
AGGCAAUGAAAAUGAAAAUUAUUGCCCCU---CACCC---ACCGCACACAAAAU--UUGGGGGAGGGGGGGGGGGUCCCUAGACCGUAAAGGGGUUAAGGGUAAUCACA
.((((((((.........))))))))(((---(.(((---.((.(.((......--.))).)).)))))))((...((((.((((.......)))).))))...))... ( -34.90)
>DroSec_CAF1 22464 87 - 1
AGGCAAUGA------AAAUUAUUGCCCCU---CACCC---ACCGCACACAAAACAUUUG----------GGGGGAUUCCUAGACCGUAAAGGGGUUAAGGGUAAUCACA
.((((((((------...))))))))...---..(((---.(((.............))----------))))(((((((.((((.......)))).))))..)))... ( -23.02)
>DroSim_CAF1 22587 93 - 1
AGGCAAUGAAAAUGAAAAUUAUUGCCCCU---CACCC---ACCGCACACAAAAUAUUUG----------GGGGGAUUCCUAGACCGUAAAGGGGUUAAGGGUAAUCACA
.((((((((.........))))))))...---..(((---.(((.............))----------))))(((((((.((((.......)))).))))..)))... ( -23.12)
>DroYak_CAF1 24178 103 - 1
AGGCAAUGAAAAUGAAAAUUAUUGCCCCUCCUCACCCACCACCGCUCACAAAAUUUGAGGG------GGGGGUGAUGCCUAGACCGUAAAGGGGUUAAAGGUAAUCACA
.((((((((.........)))))))).....((((((.((.((.((((.......))))))------))))))))(((((.((((.......))))..)))))...... ( -35.60)
>consensus
AGGCAAUGAAAAUGAAAAUUAUUGCCCCU___CACCC___ACCGCACACAAAAUAUUUG__________GGGGGAUUCCUAGACCGUAAAGGGGUUAAGGGUAAUCACA
.((((((((.........)))))))).......((((...(((..........................((((...))))...((.....)))))...))))....... (-20.48 = -20.23 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:44 2006