| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,036,425 – 13,036,524 |
| Length | 99 |
| Max. P | 0.507269 |
| Location | 13,036,425 – 13,036,524 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -17.02 |
| Energy contribution | -16.92 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13036425 99 + 23771897 ACAUCUUAACCAUCUU---AUAAUUGCCU----CGUAACCACAGACCCUCCUCCUCGGUGGACAAGUUGUCGGAACAUGCUGACAACGAGUAUUACUAUGCGGAGA ................---.......(..----((((.((((.((.........)).))))((..((((((((......))))))))..)).......))))..). ( -21.40) >DroSec_CAF1 20002 99 + 1 ACAUCUUAACCAUAUU---AUUAUUGCGU----CCCAACCACAGACCCUCCUCCUCGGUGGACAAGUUGUCGGAACAUGCUGACAACGAGUAUUACUAUGCAGAGA ...((((...((((.(---(.((((.(((----((..(((...((......))...)))))))..((((((((......))))))))))))).)).))))..)))) ( -23.20) >DroSim_CAF1 20107 99 + 1 ACAUCUUAACCAUAUU---AUAAUUGCGU----CCUAACCACAGACCCUCCUCCUCGGUGGACAAGUUGUCGGAACAUGCUGACAACGAGUAUUACUAUGCAGAGA ...((((...((((.(---(....(((((----((..(((...((......))...)))))))..((((((((......))))))))..))).)).))))..)))) ( -22.60) >DroEre_CAF1 20419 98 + 1 ACAUCUUAACCAGCUA---AUAAUUGCCCAU-----AACCACAGACCCUCCUCGUCGGUGGACAAGUUGUCAGAGCAUGCUGACAACGAGUAUUACUAUGCGGAGA .........((.((..---.....(((.(..-----..((((.(((.......))).))))....((((((((......))))))))).))).......))))... ( -25.54) >DroYak_CAF1 21602 103 + 1 ACAUCUUAACCAUCUA---AUAAUUGCUAAUAAUCUAACCACAGACCCUCCUCGUCGGUGGACAAGUUGUCAGAACAUGCUGACAACGAGUAUUACUACGCGGAGA ................---............................((((.(((.(((((((..((((((((......))))))))..)).)))))))).)))). ( -26.10) >DroAna_CAF1 19893 100 + 1 AUAUU-UAAGGACUUGAGGAUUAAUGUGU-----UUACCCUUAGUCCUUCAUCUUCAGUGGAUAAGCUGUCGGAGCAUGCAGACAAUGAGUACUACUACGCGGAGA .....-.(((((((.((((..(((.....-----))).)))))))))))..(((((.((((....(((((....))).))((((.....)).)).))))..))))) ( -22.30) >consensus ACAUCUUAACCAUCUU___AUAAUUGCGU____CCUAACCACAGACCCUCCUCCUCGGUGGACAAGUUGUCGGAACAUGCUGACAACGAGUAUUACUAUGCGGAGA .......................((((...........((((.((.........)).))))((..((((((((......))))))))..))........))))... (-17.02 = -16.92 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:41 2006