| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,035,113 – 13,035,218 |
| Length | 105 |
| Max. P | 0.540298 |
| Location | 13,035,113 – 13,035,218 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.73 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -20.22 |
| Energy contribution | -19.17 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13035113 105 + 23771897 UCAAAGUUGAAGGCCAUGUACACAUUUUUGGGACCCAGUUCCAGUGGAAUGGCUACAGCAGCCAGUAGCUAAAUAAUAGUGUCAAUAAUCAUUACACCCCUCAGA ....(((((..(((..((((..((((((((((((...)))))))..)))))..))))...)))..)))))........((((.(((....)))))))........ ( -24.10) >DroPse_CAF1 16426 100 + 1 UCAAAGUUGAAGGCCAUGUACACGUUUUUGGGCGACAAGUCCAAGGGUAUGGCCACAGCAGCCAGCAACUGCGGACAAGU--CAGUGGUUAAUU---CGGUCGGG ...........((((.....((..(((((((((.....)))))))))..))(((((.((((.......)))).((....)--).))))).....---.))))... ( -31.00) >DroSim_CAF1 18789 105 + 1 UCAAAGUUGAAGGCCAUGUACACAUUUUUGGGACCCAGUUCCAGUGGAAUGGCCACAGCAGCCAGUAGCUAAAUAAUAGUGUGAAUAAUCACUAUACCCCUCAGA .....((((..((((((...(((.....((((((...)))))))))..)))))).))))(((.....))).....((((((........)))))).......... ( -28.30) >DroEre_CAF1 19125 105 + 1 UCAAAGUUAAAGGCCAUGUACACAUUUUUGGGGCCCAAUUCCAGUGGAAUGGCCACAGCAGCCAGUAACUAAAUAAAGGUGUAAAUAGCUAUUGCAGACCUCAGA ....(((((..(((..(((...((....)).((((..(((((...))))))))))))...)))..)))))......((((.(.....((....))).)))).... ( -24.20) >DroYak_CAF1 20280 105 + 1 UCAAAGUUGAAGGCCAUGUACACAUUUUUGGGCCCCAAUUCCAGUGGAAUGGCCACGGCAGCCAGUAACUAAAUAAAAAUGUAAAGAUUUAUUAUUCCCCUCACA ....(((((..(((..(((...((....))((((...(((((...))))))))))))...)))..)))))................................... ( -19.60) >DroPer_CAF1 16369 100 + 1 UCAAAGUUGAAGGCCAUGUACACGUUUUUGGGCGACAAGUCCAAGGGUAUGGCCACAGCAGCCAGCAACUGCGGACAAGU--CAGUGGUUAAUU---CGGUCGGG ...........((((.....((..(((((((((.....)))))))))..))(((((.((((.......)))).((....)--).))))).....---.))))... ( -31.00) >consensus UCAAAGUUGAAGGCCAUGUACACAUUUUUGGGCCCCAAUUCCAGUGGAAUGGCCACAGCAGCCAGUAACUAAAUAAAAGUGUCAAUAGUUAUUA_ACCCCUCAGA ....(((((..(((..(((...(((((((((((.....))))))..)))))...)))...)))..)))))................................... (-20.22 = -19.17 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:40 2006