Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,315,881 – 1,315,977 |
Length | 96 |
Max. P | 0.516728 |
Location | 1,315,881 – 1,315,977 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.47 |
Mean single sequence MFE | -29.93 |
Consensus MFE | -21.46 |
Energy contribution | -21.97 |
Covariance contribution | 0.51 |
Combinations/Pair | 1.44 |
Mean z-score | -0.98 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1315881 96 + 23771897 UUUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGAAGCGUAUAGGUAAGCACCUCUACGAACAUCUCCAGGCGAGCGGCAAGACUCCCGGUG ............(((.....((.((((((..((((((((..((((.((((....)))).))))....))))))))..))))))...))....))). ( -34.20) >DroPse_CAF1 1890 89 + 1 ------AUCA-AGCUGCAGUGUAGGAGCAUAUUUGCAUCAGAGUGAAGGUGAGGACCUCCACAAACAUUUCCAGGCGUGCGACCAGGCUGCCACCA ------....-....(((((.(.((((((....)))......(((.((((....)))).))).......))).(((....).))).)))))..... ( -22.60) >DroSec_CAF1 2218 96 + 1 UUUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGGAGCGUGUAGGUAAGCACCUCUACGAACAUCUCCAGGCGGGCGGCCAGACUCCCGGUG ............(((.....((.((((((..((((((((..((((.((((....)))).))))....))))))))..))))))...))....))). ( -33.00) >DroSim_CAF1 2289 96 + 1 UAUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGGAGCGUGUAGGUAAGCACCUCUACGAACAUCUCCAGGCGGGCGGCUAGACUCCCGGUG ............(((....(.((((((((..((((((((..((((.((((....)))).))))....))))))))..)))))))).).....))). ( -35.50) >DroYak_CAF1 2389 96 + 1 CAUUAAAUCAUCGCCAUGUUGUAGCUGCUGACUUGGAGGAGGGUGUAGGUAAGCACCUCCACGAACAUCUCCAGGCGGGCGGCCAGACUCCCGCUG ............((...(((...((((((..(((((((..(.(((.((((....)))).)))...)..)))))))..))))))..)))....)).. ( -32.70) >DroAna_CAF1 2074 96 + 1 UCUCAAAUCAAAACCAAGUUGUAGCUGCUGAUCUGCAACAGGGUGUAGUUGAGGACUUCGACAAACAUCUCCAGCCGAGCGGCCAAACUUCCAGUG ((((((......(((..(((((((........)))))))..)))....))))))...................(((....)))............. ( -21.60) >consensus UAUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGGAGCGUGUAGGUAAGCACCUCUACGAACAUCUCCAGGCGGGCGGCCAGACUCCCGGUG ............(((.....((.((((((..((((((((.(.(((.((((....)))).)))...).))))))))..))))))...))....))). (-21.46 = -21.97 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:09 2006