Locus 452

Sequence ID 3L_DroMel_CAF1
Location 1,315,881 – 1,315,977
Length 96
Max. P 0.516728
window659

overview

Window 9

Location 1,315,881 – 1,315,977
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.47
Mean single sequence MFE -29.93
Consensus MFE -21.46
Energy contribution -21.97
Covariance contribution 0.51
Combinations/Pair 1.44
Mean z-score -0.98
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.516728
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1315881 96 + 23771897
UUUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGAAGCGUAUAGGUAAGCACCUCUACGAACAUCUCCAGGCGAGCGGCAAGACUCCCGGUG
............(((.....((.((((((..((((((((..((((.((((....)))).))))....))))))))..))))))...))....))). ( -34.20)
>DroPse_CAF1 1890 89 + 1
------AUCA-AGCUGCAGUGUAGGAGCAUAUUUGCAUCAGAGUGAAGGUGAGGACCUCCACAAACAUUUCCAGGCGUGCGACCAGGCUGCCACCA
------....-....(((((.(.((((((....)))......(((.((((....)))).))).......))).(((....).))).)))))..... ( -22.60)
>DroSec_CAF1 2218 96 + 1
UUUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGGAGCGUGUAGGUAAGCACCUCUACGAACAUCUCCAGGCGGGCGGCCAGACUCCCGGUG
............(((.....((.((((((..((((((((..((((.((((....)))).))))....))))))))..))))))...))....))). ( -33.00)
>DroSim_CAF1 2289 96 + 1
UAUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGGAGCGUGUAGGUAAGCACCUCUACGAACAUCUCCAGGCGGGCGGCUAGACUCCCGGUG
............(((....(.((((((((..((((((((..((((.((((....)))).))))....))))))))..)))))))).).....))). ( -35.50)
>DroYak_CAF1 2389 96 + 1
CAUUAAAUCAUCGCCAUGUUGUAGCUGCUGACUUGGAGGAGGGUGUAGGUAAGCACCUCCACGAACAUCUCCAGGCGGGCGGCCAGACUCCCGCUG
............((...(((...((((((..(((((((..(.(((.((((....)))).)))...)..)))))))..))))))..)))....)).. ( -32.70)
>DroAna_CAF1 2074 96 + 1
UCUCAAAUCAAAACCAAGUUGUAGCUGCUGAUCUGCAACAGGGUGUAGUUGAGGACUUCGACAAACAUCUCCAGCCGAGCGGCCAAACUUCCAGUG
((((((......(((..(((((((........)))))))..)))....))))))...................(((....)))............. ( -21.60)
>consensus
UAUCAAAUCAUGGCCAUAUUGUAGCUGCUGACUUGGAGGAGCGUGUAGGUAAGCACCUCUACGAACAUCUCCAGGCGGGCGGCCAGACUCCCGGUG
............(((.....((.((((((..((((((((.(.(((.((((....)))).)))...).))))))))..))))))...))....))). (-21.46 = -21.97 +   0.51) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:09 2006