Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,010,763 – 13,010,857 |
Length | 94 |
Max. P | 0.701969 |
Location | 13,010,763 – 13,010,857 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.17 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -19.26 |
Energy contribution | -19.57 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.60 |
Structure conservation index | 0.79 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13010763 94 - 23771897 CA----GCACUUUACUAUCGCAAAAUAAAAAAUUAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGG-ACC ..----((...........))..............((((((((.....(((((((((((....)))).))))..))).....))))))))------------------.....-... ( -25.20) >DroSec_CAF1 1778 95 - 1 AA----GCACUUUACUAUCGCAAAAUAAAAAAUUAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGGCACC ..----((...((((.........((((....))))..(((((.....(((((((((((....)))).))))..))).....))))))))------------------)...))... ( -25.70) >DroSim_CAF1 1792 95 - 1 CA----GCACUUUACUAUCGCAAAAUAAAAAAUUAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGGCACC ..----((...((((.........((((....))))..(((((.....(((((((((((....)))).))))..))).....))))))))------------------)...))... ( -25.70) >DroEre_CAF1 4136 94 - 1 CA----GCACUUUACGUUCGCAAAAUAAAAAA-UAUAUUCGUGAAAACGGUCUGCGCCAGUGGUGGCAGCAGCGGCUCAAAACACGAGUA------------------AUCGGCACG ..----((.........((((...........-.....((((....))))..(((((((....)))).))))))).........(((...------------------.)))))... ( -22.40) >DroYak_CAF1 1795 94 - 1 CA----GCACUUUACCUUCGCAAAAUAAAAAA-UAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGGCACG ..----((...........))...........-..((((((((.....(((((((((((....)))).))))..))).....))))))))------------------......... ( -25.20) >DroPer_CAF1 7889 113 - 1 CGGCUUGUAUUUUUUCUUCGCGAAAAAAAAAA-UAUAUGCGUGAAAACGGUCUGCACCAGUGGUGGCAGAGGCAGAACAAACCACGGAUGCUAUAUACAUAUCAAUUAAUCG---CG ..((.((((((((((.((.....)).))))))-)))).))((((......((((((((...))).)))))((((...(.......)..)))).................)))---). ( -22.90) >consensus CA____GCACUUUACUAUCGCAAAAUAAAAAA_UAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA__________________AUCGGCACC ...................................((((((((.....(((((((((((....)))).))))..))).....))))))))........................... (-19.26 = -19.57 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:30 2006