Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,008,187 – 13,008,307 |
Length | 120 |
Max. P | 0.792523 |
Location | 13,008,187 – 13,008,307 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.87 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -28.08 |
Energy contribution | -28.20 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.98 |
Structure conservation index | 0.85 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13008187 120 + 23771897 UUUUCGUCUCUGUUUUUACUUUCACGUGCGCCGUGCCCCCCCCCCCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA ...................((((((((((.(((((((((........((.....))..((((((((((...........))))))))))...)))))...)))).....)))))))))). ( -35.30) >DroSec_CAF1 15151 114 + 1 UUUUCGUCUCUGUUUUUACUUUCACGUGCGCCGUGCCC------CCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA ...................((((((((((.((((((((------(..((.....))..((((((((((...........))))))))))...)))))...)))).....)))))))))). ( -35.30) >DroSim_CAF1 17703 114 + 1 UUUUCGUCUCUGUUUUUACUUUCACGAGCGCCGUGCCC------CCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA ...................(((((((.((.((((((((------(..((.....))..((((((((((...........))))))))))...)))))...)))).....)).))))))). ( -30.70) >DroYak_CAF1 16949 113 + 1 UUUUCGUCUGUGUUUUUACUUUCACGUGUGCUGU-CCC------CCCGCAAGAUGAUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA ...................((((((((((..((.-...------(((((.((.(((..((((((((((...........)))))))))).)))...))..))))).)).)))))))))). ( -30.70) >consensus UUUUCGUCUCUGUUUUUACUUUCACGUGCGCCGUGCCC______CCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA ...................((((((((((.((((((((........(....)......((((((((((...........))))))))))....))))...)))).....)))))))))). (-28.08 = -28.20 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006