| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,005,870 – 13,005,990 |
| Length | 120 |
| Max. P | 0.709476 |
| Location | 13,005,870 – 13,005,990 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.15 |
| Mean single sequence MFE | -34.30 |
| Consensus MFE | -31.54 |
| Energy contribution | -31.10 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13005870 120 - 23771897 UGACUUCGCUUGACUGACACAAUUUCCCAAAGGCCUUUGUUCGCCGAUUGUGGAUCAGUUGGUCAGGAAAAGCCGAUGAAAAGCAAAGGCCAAUUGUUAUUGUUUGGGAGAUGCUGUAUG ................(((..((((((((((((((((((((.((((((((.....))))))))..((.....)).......))))))))))(((....))).))))))))))..)))... ( -37.60) >DroSec_CAF1 12845 120 - 1 UGACUUCGCUUGACUGACACAAUUUUCCAAAGGCCUUUGUUCGCCGAUUGUGGAUCAGUUGGUCAGGAAAAGCCGAUGAAAAGCAAAGACCAAUUGUUAUUGUUUGGGAGACGCUGUCUG .(((..(((((..(((((.(((((.((((..(((........))).....))))..))))))))))...)))).......((((((.(((.....))).)))))).(....))..))).. ( -32.90) >DroSim_CAF1 15403 120 - 1 UGACUUCGCUUGACUGACACAAUUUCCCAAAGGCCUUUGUUCGCCGAUUGUGGAUCAGUUGGUCAGGAAAAGCCGAUAAAAAGCAAAGACCAAUUGUUAUUGUUUGGGAGACGCUGUCUG ...............((((...((((((...(((.(((.((.((((((((.....)))))))).)).))).)))......((((((.(((.....))).))))))))))))...)))).. ( -34.10) >DroEre_CAF1 12746 116 - 1 UGACUUCGCUUGACUGACACAAUUUCCCAAAGGCCUUUGUUCGCCGAUUGUGGAUCAGUUGGUCAGGAAAAGCCGAUGAAAAGCAAAGGCCAAUUGUUAUUCUUUGGAAGAAGCU----G ...((((((((..(((((.(((((((((((.(((........)))..))).)))..))))))))))...))))(((.(((.(((((.......))))).))).))))))).....----. ( -34.00) >DroYak_CAF1 13230 116 - 1 UGACUUCGCUUGACUGACACAAUUUCCCAAAGGCCUUUGUUCGCCGAUUGUGGAUCAGUUGGUCAGGAAAAGCCGAUGAAAAGCAAAGGCCAAUUGUUAUUGUUUGGAAGAAGCU----G ...((((((((..(((((.(((((((((((.(((........)))..))).)))..))))))))))...)))).......((((((..((.....))..)))))).)))).....----. ( -32.90) >consensus UGACUUCGCUUGACUGACACAAUUUCCCAAAGGCCUUUGUUCGCCGAUUGUGGAUCAGUUGGUCAGGAAAAGCCGAUGAAAAGCAAAGGCCAAUUGUUAUUGUUUGGGAGAAGCUGU_UG ...((((((((..(((((.(((((((((((.(((........)))..))).)))..))))))))))...)))).......((((((.(((.....))).)))))).)))).......... (-31.54 = -31.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:24 2006