Locus 4511

Sequence ID 3L_DroMel_CAF1
Location 13,005,587 – 13,005,678
Length 91
Max. P 0.895870
window7048

overview

Window 8

Location 13,005,587 – 13,005,678
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 90.07
Mean single sequence MFE -18.80
Consensus MFE -17.51
Energy contribution -16.97
Covariance contribution -0.54
Combinations/Pair 1.23
Mean z-score -1.99
Structure conservation index 0.93
SVM decision value 0.99
SVM RNA-class probability 0.895870
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13005587 91 - 23771897
AUAAGAAUGUUUUUAGACUGGUUAAGAUCUAGUCUUGAAAAACACGGGAAACUCCAAAUGAAAACCAUCAAAUAUUCUAUGUUUCCUUUUU
.......((((((((((((((.......)))))))..))))))).(((((((............................))))))).... ( -17.99)
>DroSec_CAF1 12588 90 - 1
AUAAGAAUGUUUUUAGACUAGUUAAGAUCUAGUCUUGAAAAACACGUGAAACUCCAAAUGAAAACCAUUAAAUAUUUC-AGUUUUCUUUUG
..(((((((((((((((((((.......)))))))..)))))))..(((((.....((((.....)))).....))))-)...)))))... ( -16.90)
>DroSim_CAF1 15146 90 - 1
AUAAGAAUGUUUUUAGACUGGUUAUGAUCUAGUCUUGAAAAACACGGGAAGCUCCAGAUGAAAACCAUUAAACAUUUC-GGUUUCCUUUUG
.......((((((((((((((.......)))))))..))))))).(((((((.(.(((((............))))).-)))))))).... ( -21.50)
>consensus
AUAAGAAUGUUUUUAGACUGGUUAAGAUCUAGUCUUGAAAAACACGGGAAACUCCAAAUGAAAACCAUUAAAUAUUUC_AGUUUCCUUUUG
.......((((((((((((((.......)))))))..))))))).((((((((...((((............))))...)))))))).... (-17.51 = -16.97 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:23 2006