Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,315,630 – 1,315,738 |
Length | 108 |
Max. P | 0.540440 |
Location | 1,315,630 – 1,315,738 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -45.62 |
Consensus MFE | -27.89 |
Energy contribution | -30.32 |
Covariance contribution | 2.42 |
Combinations/Pair | 1.27 |
Mean z-score | -1.91 |
Structure conservation index | 0.61 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1315630 108 - 23771897 UCUGGCCCACGGUGUCGUAGAGCGCCACCAGCUUACGCACGGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGGCAGCCCUCCAGAGCGCUGUAUGUCUCCU .((((((.((((((((((.(((((((..((((((.......))))))....)))))))...)))))))).)).))))))(((((.((....)).)))))......... ( -51.80) >DroSec_CAF1 1979 108 - 1 UCUGGCCCACGGUGUCGUAGAGAGCCACCAGCUUGCGCACGGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGACAGCCCUCCAGAGCGCUGUAUGCCUCCU .((((((.((((((((((.(..(((.....)))..)....(((((.((....)))))))..)))))))).)).))))))(((((.((....)).)))))......... ( -46.50) >DroSim_CAF1 2039 108 - 1 UCUGGCCCACGGUGUCGUAGAGAGCCACCAGCUUGCGCACAGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGACAGCCCUCCAGAGCGCUGUAUGCCUCCU .((((((.((((((((((.(((.(((..((((((.......))))))....))).)))...)))))))).)).))))))(((((.((....)).)))))......... ( -45.60) >DroEre_CAF1 1257 108 - 1 UCUGGCCUACGGUGUCGUAGAGAGCCACCAGCUUGCGAACGGAGCUCCCAAGGUGCUCCACGCGGUGCCUGUAGGCCAGACAGCCUUCCAGAGCGCUGUAUGCCUCCU .(((((((((((..((((.(..(((.....)))..)....(((((.((...)).)))))..))))..)).)))))))))((((((((...))).)))))......... ( -50.00) >DroAna_CAF1 1817 108 - 1 UCUGGGCCACAGUGUCGCACAGGGCCACCAGUUUUCGAACCGAGCUGCCAAGAUGUUCCACUCGAUGCCUGUGCGCAAGACACCCAUCGAGAGCGCUGUAGGUCUCUU ...((((((((((((......((..(((((((((.......))))))....).))..)).(((((((..(((.(....))))..))))))).))))))).)))))... ( -37.00) >DroPer_CAF1 1687 108 - 1 GCUGGUGGACAGUGUCGCACAGGGCCACCAGCUUGCGCACAGUACUGGCCAGGUGCUCGACGCGUUGUCGGCACGCCAAGACCCCAUCCAAUACGCUGUGCUUGUCGU ((((((((.(..((.....))..)))))))))....(((((((..((((...((((.((((.....)))))))))))).((.....))......)))))))....... ( -42.80) >consensus UCUGGCCCACGGUGUCGUAGAGAGCCACCAGCUUGCGCACGGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGACAGCCCUCCAGAGCGCUGUAUGCCUCCU .((((((.((((..((((.(((.(((..((((((.......))))))....))).)))...))))..)).)).))))))(((((.((....)).)))))......... (-27.89 = -30.32 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006