Locus 451

Sequence ID 3L_DroMel_CAF1
Location 1,315,630 – 1,315,738
Length 108
Max. P 0.540440
window658

overview

Window 8

Location 1,315,630 – 1,315,738
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.28
Mean single sequence MFE -45.62
Consensus MFE -27.89
Energy contribution -30.32
Covariance contribution 2.42
Combinations/Pair 1.27
Mean z-score -1.91
Structure conservation index 0.61
SVM decision value 0.01
SVM RNA-class probability 0.540440
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1315630 108 - 23771897
UCUGGCCCACGGUGUCGUAGAGCGCCACCAGCUUACGCACGGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGGCAGCCCUCCAGAGCGCUGUAUGUCUCCU
.((((((.((((((((((.(((((((..((((((.......))))))....)))))))...)))))))).)).))))))(((((.((....)).)))))......... ( -51.80)
>DroSec_CAF1 1979 108 - 1
UCUGGCCCACGGUGUCGUAGAGAGCCACCAGCUUGCGCACGGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGACAGCCCUCCAGAGCGCUGUAUGCCUCCU
.((((((.((((((((((.(..(((.....)))..)....(((((.((....)))))))..)))))))).)).))))))(((((.((....)).)))))......... ( -46.50)
>DroSim_CAF1 2039 108 - 1
UCUGGCCCACGGUGUCGUAGAGAGCCACCAGCUUGCGCACAGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGACAGCCCUCCAGAGCGCUGUAUGCCUCCU
.((((((.((((((((((.(((.(((..((((((.......))))))....))).)))...)))))))).)).))))))(((((.((....)).)))))......... ( -45.60)
>DroEre_CAF1 1257 108 - 1
UCUGGCCUACGGUGUCGUAGAGAGCCACCAGCUUGCGAACGGAGCUCCCAAGGUGCUCCACGCGGUGCCUGUAGGCCAGACAGCCUUCCAGAGCGCUGUAUGCCUCCU
.(((((((((((..((((.(..(((.....)))..)....(((((.((...)).)))))..))))..)).)))))))))((((((((...))).)))))......... ( -50.00)
>DroAna_CAF1 1817 108 - 1
UCUGGGCCACAGUGUCGCACAGGGCCACCAGUUUUCGAACCGAGCUGCCAAGAUGUUCCACUCGAUGCCUGUGCGCAAGACACCCAUCGAGAGCGCUGUAGGUCUCUU
...((((((((((((......((..(((((((((.......))))))....).))..)).(((((((..(((.(....))))..))))))).))))))).)))))... ( -37.00)
>DroPer_CAF1 1687 108 - 1
GCUGGUGGACAGUGUCGCACAGGGCCACCAGCUUGCGCACAGUACUGGCCAGGUGCUCGACGCGUUGUCGGCACGCCAAGACCCCAUCCAAUACGCUGUGCUUGUCGU
((((((((.(..((.....))..)))))))))....(((((((..((((...((((.((((.....)))))))))))).((.....))......)))))))....... ( -42.80)
>consensus
UCUGGCCCACGGUGUCGUAGAGAGCCACCAGCUUGCGCACGGAGCUGCCAAGGUGCUCCACGCGAUGCCUGUAGGCCAGACAGCCCUCCAGAGCGCUGUAUGCCUCCU
.((((((.((((..((((.(((.(((..((((((.......))))))....))).)))...))))..)).)).))))))(((((.((....)).)))))......... (-27.89 = -30.32 +   2.42) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006