| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,997,943 – 12,998,054 |
| Length | 111 |
| Max. P | 0.654715 |
| Location | 12,997,943 – 12,998,054 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.83 |
| Mean single sequence MFE | -21.03 |
| Consensus MFE | -12.72 |
| Energy contribution | -11.73 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12997943 111 + 23771897 GAUUGAUAGAAAUAU----AUAUUUCAGUUCAAAUCAUUUGAAAUACAUAGACCACGUUUUAAA-AAGUGUGGGUCUUCAUUCAACUUAACCUAUUUUCAGGAAAUGAAUCUUAUU ((.(((.(((..(((----.((((((((..........)))))))).)))..((((((((....-)))))))).)))))).)).......(((......))).............. ( -17.70) >DroSec_CAF1 5023 99 + 1 GAUUGAAAGAAAUAUAUGUAUAUUUUAGUUCAAAUCACUUGAAUUGCAUAGACCACGUUUUAAAAAAAUGUGGGUCUUCGAUCAACUUAACCUAUUUUC----------------- (((((((.((....((((((.((((.(((.......))).))))))))))..((((((((.....)))))))).)))))))))................----------------- ( -22.30) >DroSim_CAF1 6486 115 + 1 GAUUGAAUGAAAUAUAUGUAUAUUUUAGUUCAAAUCACUUUAAAUGCAUAGACCACGUUUUAAA-AAAUCCGGGUCUUCAUUCAACUUAACCUAUUUUCAGGAAAUGUAUUUUAUU ..(((((((((...(((((((.((..(((.......)))..)))))))))((((.((..((...-.))..))))))))))))))).....(((......))).............. ( -23.10) >consensus GAUUGAAAGAAAUAUAUGUAUAUUUUAGUUCAAAUCACUUGAAAUGCAUAGACCACGUUUUAAA_AAAUGUGGGUCUUCAUUCAACUUAACCUAUUUUCAGGAAAUG_AU_UUAUU ((((((..(((((((....)))))))...)).))))......((((...(((((.((..((.....))..))))))).)))).................................. (-12.72 = -11.73 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:12 2006