Locus 4502

Sequence ID 3L_DroMel_CAF1
Location 12,995,434 – 12,995,543
Length 109
Max. P 0.646787
window7033

overview

Window 3

Location 12,995,434 – 12,995,543
Length 109
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.22
Mean single sequence MFE -26.65
Consensus MFE -19.84
Energy contribution -18.57
Covariance contribution -1.28
Combinations/Pair 1.37
Mean z-score -0.85
Structure conservation index 0.74
SVM decision value 0.24
SVM RNA-class probability 0.646787
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12995434 109 - 23771897
------CUAAUAAUCCAAAUAAUAUAUUUUUUUUUUG--UUCCACAGAGAAGGAAUCCUGGUCGGAUGCGGCAACCCGCUGCUGGACAUCUCCGCCGUUGUUCCACUGAACUUCCUG
------........................(((((((--.....)))))))(((((..(((.((((.(((((.....)))))........)))))))..)))))............. ( -24.50)
>DroPse_CAF1 2176 98 - 1
---------CUAAUCUUUUUG------AU--UCUAUC--CAAUACAGAGAAGGCAUCCUGGUUGGAUGCGGCAAUCCACUGCUGGACAUUUCCGCCAUUGUGCCGAUGGACUUUUUG
---------............------..--((((((--.............((((((.....))))))((((...((.((.((((....)))).)).))))))))))))....... ( -26.30)
>DroSec_CAF1 2295 105 - 1
----CACUACUAAUCCAAAUA------UUUUUUUUUG--UUCCACAGAGAAGGAAUCCUGGUCGGAUGCGGCAACCCGCUGCUGGACAUCUCCGCCGUUGUUCCCCUGAACUUCCUG
----.................------...(((((((--.....)))))))(((((..(((.((((.(((((.....)))))........)))))))..)))))............. ( -23.60)
>DroEre_CAF1 2416 107 - 1
AUAGCACUAAUAAUCCAAAUG------AU--UUUCUG--UUUCACAGAGAAGGAACCCUGGUCGGAUGCGGCAACCCGCUGCUGGACAUCUCCGCCGUUGUUCCCCUGGACUUCCUG
.............((((....------.(--((((((--.....)))))))(((((..(((.((((.(((((.....)))))........)))))))..)))))..))))....... ( -31.40)
>DroAna_CAF1 7655 105 - 1
----UUUUCAUAAUCCGUUUG------AU--UCUGUCUUCCCUGCAGAGAAGGUAUCCUUGUGGGAUGUGGCAAUCCGCUGUUGGACAUCUCCGCCAUUGUGCCGAUGGACUUCCUC
----.........((((((..------.(--(((((.......))))))..(((((....(((((((((((((......))))..))))).))))....)))))))))))....... ( -27.80)
>DroPer_CAF1 2176 98 - 1
---------CUAAUCUUUUUG------AU--UCUAUC--CAAUACAGAGAAGGCAUCCUGGUUGGAUGCGGCAAUCCACUGCUGGACAUUUCCGCCAUUGUGCCGAUGGACUUUUUG
---------............------..--((((((--.............((((((.....))))))((((...((.((.((((....)))).)).))))))))))))....... ( -26.30)
>consensus
______CUAAUAAUCCAAAUG______AU__UCUAUC__CUCCACAGAGAAGGAAUCCUGGUCGGAUGCGGCAACCCGCUGCUGGACAUCUCCGCCAUUGUGCCGAUGGACUUCCUG
...................................................(((((..((((.((((((((((......)))))..)))).).))))..)))))............. (-19.84 = -18.57 +  -1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:08 2006