| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,994,709 – 12,994,800 |
| Length | 91 |
| Max. P | 0.608070 |
| Location | 12,994,709 – 12,994,800 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 84.92 |
| Mean single sequence MFE | -20.71 |
| Consensus MFE | -18.41 |
| Energy contribution | -18.47 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12994709 91 - 23771897 AAUACUUCUUAUUAU---UUCAUUU-CCCAGGGCUUCUUCCUCACUGUGAACCCGCCAAGCAUUAUGCAGGUGGCGGCCACCGCCCACGCCAAAC ...............---.......-....((((...((((.....).))).((((((.((.....))...)))))).....))))......... ( -20.60) >DroGri_CAF1 1807 89 - 1 AUUGUU-CUU-UGAUCUUUGCAU----GCAGGGCUUCUUCUUGACCGUUAAUCCGCCCAGCAUAAUGCGAGUGGCCGCCACCGCCCAUGCCAAGC ......-...-....(((.((((----(..((((....................))))........(((.((((...))))))).))))).))). ( -21.25) >DroSec_CAF1 1575 90 - 1 AAUACUUCUU-UAAU---UUAAUUU-CCCAGGGCUUCUUCCUCACUGUGAACCCGCCAAGCAUUAUGCAGGUGGCGGCCACCGCCCAUGCCAAAC ..........-....---.......-....((((...((((.....).))).((((((.((.....))...)))))).....))))......... ( -20.60) >DroSim_CAF1 1574 90 - 1 AAUACUUUUU-UAAU---UUCAUUU-CCCAGGGCUUCUUCCUCACUGUGAACCCGCCAAGCAUUAUGCAGGUGGCGGCCACCGCCCAUGCCAAAC ..........-....---.......-....((((...((((.....).))).((((((.((.....))...)))))).....))))......... ( -20.60) >DroEre_CAF1 1650 91 - 1 AAUACUUUAC-CUAU---UCCAUUUUCCCAGGGCUUCUUCCUCACUGUGAACCCGCCAAGCAUCAUGCAGGUGGCGGCUACCGCCCACGCCAAAC ..........-....---............((((...((((.....).))).((((((.((.....))...)))))).....))))......... ( -20.60) >DroYak_CAF1 1703 91 - 1 AACACUUCAC-CUAU---UCCAUUUCCCCAGGGCUUCUUCCUCACUGUGAACCCGCCAAGCAUCAUGCAGGUGGCGGCCACCGCCCACGCCAAAC ..........-....---............((((...((((.....).))).((((((.((.....))...)))))).....))))......... ( -20.60) >consensus AAUACUUCUU_UUAU___UUCAUUU_CCCAGGGCUUCUUCCUCACUGUGAACCCGCCAAGCAUUAUGCAGGUGGCGGCCACCGCCCACGCCAAAC ..............................((((.......((.....))..((((((.((.....))...)))))).....))))......... (-18.41 = -18.47 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:07 2006