Locus 450

Sequence ID 3L_DroMel_CAF1
Location 1,314,025 – 1,314,123
Length 98
Max. P 0.940071
window657

overview

Window 7

Location 1,314,025 – 1,314,123
Length 98
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 72.23
Mean single sequence MFE -30.33
Consensus MFE -13.64
Energy contribution -16.17
Covariance contribution 2.53
Combinations/Pair 1.21
Mean z-score -2.13
Structure conservation index 0.45
SVM decision value 1.28
SVM RNA-class probability 0.940071
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1314025 98 - 23771897
AGGAUUUUCACUGUAGUACAAU-----CA-ACCGCACACAAGUGCGAGCACCGGUGU---UGCAGGUGUAUGUGUGUGUGUGUGCGAUA-GGGA-AACAAUCAUGUUUU--
..(((((((.((((.(......-----).-..((((((((.(..((.(((((.(...---..).))))).))..)...)))))))))))-).))-)..)))).......-- ( -29.20)
>DroSec_CAF1 344 89 - 1
CCGAUUUUCACUGUAGUACUAU-----CA-A--GCACACAAGUGCGAGCACCGAUGU---UGCAGGUG--------UGUGUGUGCGAUA-GGGAAAACAAUCAUGUUUU--
..(.(((((.((((.((((...-----..-.--(((((((..(((.((((....)))---))))..))--------))))))))).)))-).))))))...........-- ( -25.20)
>DroSim_CAF1 397 95 - 1
CCGAUUUUCACUGUAGUACUAU-----CA-A--GCACACAAGUGCGAGCACCGGUGU---UGCAGGUGUAUGUG--UGUGUGUGCGAUA-GGGAAAACAAUCAUGUUUU--
((.......((....)).((((-----(.-.--(((((((.(..((.(((((.(...---..).))))).))..--).)))))))))))-)))((((((....))))))-- ( -29.70)
>DroYak_CAF1 398 99 - 1
CCGAUUUCCACUGUAGUACUAU-----CA-AUCGCACACAAGUGCGAGCACCGGUGC---UGCAGGUGUGUGUGUGUGUGUGUGCGAUA-GAGGAAACAAUCAUGUUUU--
..(.(((((.((((.((((...-----((-..((((((((..(((.((((....)))---))))..))))))))..))...)))).)))-).))))))...........-- ( -37.50)
>DroAna_CAF1 386 95 - 1
CCAAUCGUCACUGUUGUACUAU-----CAGA--ACAAACACAUGC-AACACCGGUGU---UGCAGGUGUAUGUGUGCCU----CGUAUG-AGGGAAACAAUCAUGUUUUUC
....((((.((.(..((((...-----....--(((.((((.(((-((((....)))---)))).)))).)))))))..----))))))-)(..(((((....)))))..) ( -25.71)
>DroPer_CAF1 356 100 - 1
-------AUAUUAUAGUUCAACACACACA-CACGCACACAGAUGCAGG--CCGGUGACUGUGCAUGAGCGAGUGUGCUUGUGUGUGUUGCGUGAAAACAAUCAUGUUUU-A
-------...............(((((((-((.((((((....((((.--.......))))((....))..)))))).))))))))).((((((......))))))...-. ( -34.70)
>consensus
CCGAUUUUCACUGUAGUACUAU_____CA_A__GCACACAAGUGCGAGCACCGGUGU___UGCAGGUGUAUGUGUGUGUGUGUGCGAUA_GGGAAAACAAUCAUGUUUU__
.................................(((((((..((((.(((((.((......)).)))))...))))..)))))))........((((((....)))))).. (-13.64 = -16.17 +   2.53) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:07 2006