Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,314,025 – 1,314,123 |
Length | 98 |
Max. P | 0.940071 |
Location | 1,314,025 – 1,314,123 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.23 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -13.64 |
Energy contribution | -16.17 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.21 |
Mean z-score | -2.13 |
Structure conservation index | 0.45 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.940071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1314025 98 - 23771897 AGGAUUUUCACUGUAGUACAAU-----CA-ACCGCACACAAGUGCGAGCACCGGUGU---UGCAGGUGUAUGUGUGUGUGUGUGCGAUA-GGGA-AACAAUCAUGUUUU-- ..(((((((.((((.(......-----).-..((((((((.(..((.(((((.(...---..).))))).))..)...)))))))))))-).))-)..)))).......-- ( -29.20) >DroSec_CAF1 344 89 - 1 CCGAUUUUCACUGUAGUACUAU-----CA-A--GCACACAAGUGCGAGCACCGAUGU---UGCAGGUG--------UGUGUGUGCGAUA-GGGAAAACAAUCAUGUUUU-- ..(.(((((.((((.((((...-----..-.--(((((((..(((.((((....)))---))))..))--------))))))))).)))-).))))))...........-- ( -25.20) >DroSim_CAF1 397 95 - 1 CCGAUUUUCACUGUAGUACUAU-----CA-A--GCACACAAGUGCGAGCACCGGUGU---UGCAGGUGUAUGUG--UGUGUGUGCGAUA-GGGAAAACAAUCAUGUUUU-- ((.......((....)).((((-----(.-.--(((((((.(..((.(((((.(...---..).))))).))..--).)))))))))))-)))((((((....))))))-- ( -29.70) >DroYak_CAF1 398 99 - 1 CCGAUUUCCACUGUAGUACUAU-----CA-AUCGCACACAAGUGCGAGCACCGGUGC---UGCAGGUGUGUGUGUGUGUGUGUGCGAUA-GAGGAAACAAUCAUGUUUU-- ..(.(((((.((((.((((...-----((-..((((((((..(((.((((....)))---))))..))))))))..))...)))).)))-).))))))...........-- ( -37.50) >DroAna_CAF1 386 95 - 1 CCAAUCGUCACUGUUGUACUAU-----CAGA--ACAAACACAUGC-AACACCGGUGU---UGCAGGUGUAUGUGUGCCU----CGUAUG-AGGGAAACAAUCAUGUUUUUC ....((((.((.(..((((...-----....--(((.((((.(((-((((....)))---)))).)))).)))))))..----))))))-)(..(((((....)))))..) ( -25.71) >DroPer_CAF1 356 100 - 1 -------AUAUUAUAGUUCAACACACACA-CACGCACACAGAUGCAGG--CCGGUGACUGUGCAUGAGCGAGUGUGCUUGUGUGUGUUGCGUGAAAACAAUCAUGUUUU-A -------...............(((((((-((.((((((....((((.--.......))))((....))..)))))).))))))))).((((((......))))))...-. ( -34.70) >consensus CCGAUUUUCACUGUAGUACUAU_____CA_A__GCACACAAGUGCGAGCACCGGUGU___UGCAGGUGUAUGUGUGUGUGUGUGCGAUA_GGGAAAACAAUCAUGUUUU__ .................................(((((((..((((.(((((.((......)).)))))...))))..)))))))........((((((....)))))).. (-13.64 = -16.17 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:07 2006