Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 173,994 – 174,154 |
Length | 160 |
Max. P | 0.916958 |
Location | 173,994 – 174,114 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -47.30 |
Consensus MFE | -43.21 |
Energy contribution | -43.10 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.16 |
Structure conservation index | 0.91 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 173994 120 - 23771897 CAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCCGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCAGUUCCAGUCGGCACUGCGAGCAACUGGCACUGGAACCUCG (((((.....)))))(((.(((((..((((.(((((((.((........)).))).))))..))))..)))))....(((((.(((((..((.......)).))))).))))).)))... ( -43.60) >DroSec_CAF1 7700 120 - 1 CAGAAUAAUCUUCUGGGUGCGUUUGACUCUGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCAGUUCCAGUCGGCACUGCGAGCAACUGGAACUGGAACCUCG (((((.....)))))((((((((((.((((.((((((((((........)))))).)))).....))))..)))))))((((((((((..((.......)).))))))))))..)))... ( -51.30) >DroYak_CAF1 7909 120 - 1 CAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGGACCGCUGAUCAGACGCUCAGCGAGUUCAACGAGGAGGACGAACGUCAGUUCCAGUCGGCACUGCGAGCUACUGGCACUGGGACCUCG (((((.....)))))(((.(((((..((((.((((((((((.(....).)))))).))))..))))..)))))....(((((.(((((.(((.......)))))))).))))).)))... ( -47.00) >consensus CAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCAGUUCCAGUCGGCACUGCGAGCAACUGGCACUGGAACCUCG (((((.....)))))(((.(((((..(((..((((((((((........)))))).))))...)))..)))))....(((((.(((((..((.......)).))))).))))).)))... (-43.21 = -43.10 + -0.11)
Location | 174,034 – 174,154 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -44.60 |
Consensus MFE | -39.74 |
Energy contribution | -39.63 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.66 |
Structure conservation index | 0.89 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 174034 120 - 23771897 AUUUGAGGCACCGCACAGUACAGCAUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCCGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCA ......(((...((((......((.((....)).))...((((((.....))))))))))((((..((((.(((((((.((........)).))).))))..))))..))))....))). ( -41.50) >DroSec_CAF1 7740 120 - 1 AUUUGAGGCACCGCACAGUACAGCAUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCUGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCA ......(((...((((......((.((....)).))...((((((.....))))))))))(((((.((((.((((((((((........)))))).)))).....))))..)))))))). ( -44.90) >DroYak_CAF1 7949 120 - 1 AUUCGAGGCACCCCACAGUACAGCCUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGGACCGCUGAUCAGACGCUCAGCGAGUUCAACGAGGAGGACGAACGUCA ......(((........((((.(((((....)))))...((((((.....))))))))))((((..((((.((((((((((.(....).)))))).))))..))))..))))....))). ( -47.40) >consensus AUUUGAGGCACCGCACAGUACAGCAUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCA ......(((........((((.((.((....)).))...((((((.....))))))))))((((..(((..((((((((((........)))))).))))...)))..))))....))). (-39.74 = -39.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:46 2006