Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,987,592 – 12,987,709 |
Length | 117 |
Max. P | 0.913666 |
Location | 12,987,592 – 12,987,709 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -34.52 |
Consensus MFE | -28.16 |
Energy contribution | -27.76 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.17 |
Mean z-score | -1.81 |
Structure conservation index | 0.82 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12987592 117 + 23771897 UGCUUUGUUGGGCUGGAAUGGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUGGCACCUUUAGAUGAGUCA---UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU .((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((....(((((((((((....---))))))..)))))......)))))..).)))).. ( -35.60) >DroSec_CAF1 104912 117 + 1 UGCUUUGUUGGGCUGGAAUGGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUUGCACCUUUAGAUGAGUCA---UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU .((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((((..(((((((((((....---))))))..)))))....)))))))..).)))).. ( -36.60) >DroSim_CAF1 114546 117 + 1 UGCUUUGUUGGGCUGGAAUUGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUUGCACCUUUAGAUGAGUCA---UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU .((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((((..(((((((((((....---))))))..)))))....)))))))..).)))).. ( -36.60) >DroEre_CAF1 110927 117 + 1 UGCUUUGUUGGGCUGGAAUGGAUUUUAGAAGCUCCACUUCAUCGUCGGAGCUGUCGAAUGGAUUUGCACCUUUGGAAGAUUCA---UCAUCUUUAAAAGGAUUUAAGUCCUCUGGAUAGU .((((((.(((..((((.((((..........)))).))))))).))))))((((.(..(((((((..(((((.((((((...---..)))))).)))))...)))))))..).)))).. ( -32.30) >DroYak_CAF1 109714 120 + 1 UACUUUGUUGGGCUGGAAUGGAUUUUAGAAGCUCAACUUCAUCGUCGGAGCUGUCAAAUGGAUUUGCACCUUUGGAUGAAUCAUCAUCAUCUUUAAAAGGAUUUAAGUCCUCUGGGUAGU ......((((((((.(((.....)))...))))))))............(((..(....(((((((..(((((((((((.......))))))...)))))...)))))))....)..))) ( -31.50) >consensus UGCUUUGUUGGGCUGGAAUGGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUUGCACCUUUAGAUGAGUCA___UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU .((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((((..(((((((((((.......))))))...)))))...)))))))..).)))).. (-28.16 = -27.76 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:00 2006