Locus 4496

Sequence ID 3L_DroMel_CAF1
Location 12,985,068 – 12,985,188
Length 120
Max. P 0.941325
window7020

overview

Window 0

Location 12,985,068 – 12,985,188
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.42
Mean single sequence MFE -40.16
Consensus MFE -26.86
Energy contribution -27.10
Covariance contribution 0.24
Combinations/Pair 1.15
Mean z-score -2.69
Structure conservation index 0.67
SVM decision value 1.32
SVM RNA-class probability 0.941325
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12985068 120 - 23771897
AUCAAAGGUCAUGUGAGAAACUGAACCUAGCUUGCUACCACUUCAACCGCAACUGGGUGGAACGGGAGCGGCUUAAGGGAGACAAAGAAACUUAUCCGAUAUAUCGCUUGGCCAUGAUUA
((((..(((((.((((........((((((.((((.............))))))))))....((((((...(((...(....).)))...)))..))).....)))).))))).)))).. ( -30.22)
>DroSec_CAF1 102371 120 - 1
AUCAAAGGUCAUGCGAGAAACUGGACCUAGCUUGCUACCACUUCAACCGCAACUGGGUGAAACAGGAGCGGUUUAAGGGGGACCAAGAAACUUAUCCGAUAUAUCGCUUGGCCAUGAUGA
((((..(((((.((((.....((((.....((((...((.(((.((((((..(((.......)))..)))))).))).))...)))).......)))).....)))).))))).)))).. ( -41.70)
>DroSim_CAF1 112092 120 - 1
AUCAAAGGUCAUGCGAGAAACUGGACCUAGCUUGCUACCACUUCAACCGCAACUGGGUGAAACAGGAGCGGUUUAAGGGGGACCAAGAAACUUAUCCGAUAUAUCGCUUGGCCAUGAUGA
((((..(((((.((((.....((((.....((((...((.(((.((((((..(((.......)))..)))))).))).))...)))).......)))).....)))).))))).)))).. ( -41.70)
>DroEre_CAF1 108280 120 - 1
AUCAGAAGUCAUGCGAGAUACUGGACAAAGGUUGCCUCUACAUCAACCGCAACUGGGUGGAACGGGAGAGGUUUGAGGGUAGGAAAUAUAUUCAACCUGUAUAUCGCAUGGCCAUGAUUA
((((...(((((((((.((((.((.........((((((...((..((((......))))...)).))))))(((((.(((.....))).))))))).)))).)))))))))..)))).. ( -39.00)
>DroYak_CAF1 107196 120 - 1
AUCAGAAGUCAUGCGAGAUACUGGACCACGGUUGCCUCUACCUCAACCGCAACUGGGUGAAACGGGAGCGGUUUGAGGGAAAGAAAUAUAUUCAACCGGUGUAUCGCAUGGCCAUGAUUC
((((...(((((((((.(((((((((....))....(((.((((((((((..(((.......)))..)))).))))))...)))...........))))))).)))))))))..)))).. ( -48.20)
>consensus
AUCAAAGGUCAUGCGAGAAACUGGACCUAGCUUGCUACCACUUCAACCGCAACUGGGUGAAACGGGAGCGGUUUAAGGGAGACAAAGAAACUUAUCCGAUAUAUCGCUUGGCCAUGAUUA
((((..(((((.((((.....(((......(((....((.(((.((((((..(((.......)))..)))))).))))).....)))........))).....)))).))))).)))).. (-26.86 = -27.10 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:55 2006