Locus 4495

Sequence ID 3L_DroMel_CAF1
Location 12,981,506 – 12,981,626
Length 120
Max. P 0.804824
window7019

overview

Window 9

Location 12,981,506 – 12,981,626
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.42
Mean single sequence MFE -32.48
Consensus MFE -26.67
Energy contribution -26.75
Covariance contribution 0.08
Combinations/Pair 1.17
Mean z-score -1.62
Structure conservation index 0.82
SVM decision value 0.63
SVM RNA-class probability 0.804824
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12981506 120 + 23771897
GUUUAUCGCAUAUCCUUAGAGUUCAGCCACAGCUACUACGGCUUACGGUCCUGCGACGUCGCCAUAAACAUGGCACCUGCCAGUAGCUUCGGGUUCCAACUCUUAGAUUCAUUCUGCAAA
.......(((.(((...((((((.((((..(((((((..(((.....(((....)))...(((((....)))))....))))))))))...))))..))))))..)))......)))... ( -34.90)
>DroSec_CAF1 98910 120 + 1
GUUCAUCGCAUAUCCUUAGAGUUCAGCCACAGCUACUACGGCUUACGGCCCUGCGACGUCGCCAUAAACAUGGCACCUGCCAGUAGCUUCGGGUUCCAACUCUUAGAUUCAUUCUGCAAA
.......(((.(((...((((((.((((..(((((((..(((....(((........)))(((((....)))))....))))))))))...))))..))))))..)))......)))... ( -34.60)
>DroSim_CAF1 108671 120 + 1
GUUCAUCGCAUAUCCUUAGAGUUCAGCCACAGCUACUACGGCUUACGGUCCUGCGACGUCGCCAUAAACAUGGCACCCGCCAGUAGCUUCGGGUUCCAACUCCUAGAUUCAUUCUGCAAA
.......((.........(((((.((((..(((((((..(((.....(((....)))...(((((....)))))....))))))))))...))))..)))))..(((.....)))))... ( -33.70)
>DroEre_CAF1 104773 120 + 1
GUCCAUCGCGUAUCAUUAGAGUUUAGCCACAGCUUCUUCGGCUUCCGGUCCUGCGAUGUAGCCAUUUACAUGGCACCCGCCAGUCGCUUUGGGUUCCAACUUAUAGAUUCAUUCUACAAU
.((((..((.........(((...(((....)))..)))((((..(((...(((.((((((....)))))).))).)))..))))))..))))..........((((.....)))).... ( -28.30)
>DroYak_CAF1 103115 120 + 1
GUCCAACGCAUAUCCCUUGCGUUCAGCCACAGUUACUACGGCUUGCGGUCCUGCGAUGUCGCCAUUAACAUGGCACCCGCCAGUCGCUUCGGGUUCCAACUCAUAGAUUCCUUAUACAAA
((..((((((.......))))))..))........((((((((.((((...(((.((((........)))).))).)))).)))))....((((....)))).))).............. ( -30.90)
>consensus
GUUCAUCGCAUAUCCUUAGAGUUCAGCCACAGCUACUACGGCUUACGGUCCUGCGACGUCGCCAUAAACAUGGCACCCGCCAGUAGCUUCGGGUUCCAACUCAUAGAUUCAUUCUGCAAA
((.........(((...((((((.((((..(((((((..(((.....)))..(((..((.(((((....))))))).))).)))))))...))))..))))))..))).......))... (-26.67 = -26.75 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:54 2006