Locus 4494

Sequence ID 3L_DroMel_CAF1
Location 12,981,361 – 12,981,466
Length 105
Max. P 0.978724
window7018

overview

Window 8

Location 12,981,361 – 12,981,466
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -40.64
Consensus MFE -34.02
Energy contribution -33.94
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -2.35
Structure conservation index 0.84
SVM decision value 1.82
SVM RNA-class probability 0.978724
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12981361 105 - 23771897
AUUAUGUGUUGAAGCUGGACCAACUUGGCCAAGUAUCUCAUUUGACUGUGGGUCAGUGGACGAGCAGUGAAGUUACGCUGCGACUCACAGCCUCCAGUCACCUUC---------------
.....(((..((.(((((.((.....)))).))).)).))).((((((..(((..((((....((((((......))))))...)))).)))..)))))).....--------------- ( -34.40)
>DroSec_CAF1 98765 105 - 1
AUUAUGUGCUGAAGCUGGACCAUCUUGGCCAAGUAUCUCAUUUGACUGUGGGUCAGUGGACGAGCAGUGAAGUUCCGCUGCGACUCACAGGCUUUAGUCACCUUC---------------
.....(((((((((((((.((.....)))))..............(((((((((.(....)..((((((......)))))))))))))))))))))).)))....--------------- ( -40.60)
>DroSim_CAF1 108526 105 - 1
AUUAUGUGCUGAAGCUGGACCAUCUUGGCCAAGUAUCUCAUUUGACUGUGGGUCAGUGGACGAGCAGUGAAGUUCCGCUGCGACUCACAGGCUUCAGUCACCUUC---------------
.....(((((((((((((.((.....)))))..............(((((((((.(....)..((((((......)))))))))))))))))))))).)))....--------------- ( -42.80)
>DroEre_CAF1 104613 120 - 1
AUUAUGUGCUGGAGGUGGACCAUCUUGGCCAUGUAUCUUAUUUGACUGCGGGUCAGUGGACGAGCAGUGAAGUUUCGCCGCGAUUCACAGGCUCCAGUCACCUCGUCGCAGAGGAUUUUA
....((.(((((((((((.((.....)))))).............(((.(((((.((((.(((((......).))))))))))))).))).)))))))))((((......))))...... ( -42.00)
>DroYak_CAF1 102955 120 - 1
AUUAGGUGCUGAAGCUGGACCAUCCUGGCCAUGUAUCUGAUUUGAUUGUGGGUCAAUGGACGAGCGGUAAAGUUCCGCCGCGAUUCAUAGGCUCCAGUCACCUCCUCGCAGAGGAUUUCA
(((((((((....((..(......)..))...))))))))).((((((.(((((.(((((...(((((........)))))..))))).)))))))))))((((......))))...... ( -43.40)
>consensus
AUUAUGUGCUGAAGCUGGACCAUCUUGGCCAAGUAUCUCAUUUGACUGUGGGUCAGUGGACGAGCAGUGAAGUUCCGCUGCGACUCACAGGCUCCAGUCACCUUC_______________
.....(((((((((((((.((.....)))))..............(((((((((.((((.(((((......))).)))))))))))))))))))))).)))................... (-34.02 = -33.94 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:53 2006