Locus 449

Sequence ID 3L_DroMel_CAF1
Location 1,306,442 – 1,306,556
Length 114
Max. P 0.900109
window656

overview

Window 6

Location 1,306,442 – 1,306,556
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.48
Mean single sequence MFE -32.01
Consensus MFE -21.80
Energy contribution -21.43
Covariance contribution -0.37
Combinations/Pair 1.09
Mean z-score -2.22
Structure conservation index 0.68
SVM decision value 1.01
SVM RNA-class probability 0.900109
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1306442 114 - 23771897
GAGCGCAGUUAUUAGAACGGUGCUUGAUCGAUCCGAGAUCGAGAUCGAGUUCGAGCUGGAGCUGGAGCUGGGGAUGGAGAUGGAGA------UGGACACAGAAGAAAGAAAGGCAUCCCA
((((((.(((.....))).))))))..((((((((....)).))))))((((.(((....))).))))..((((((..........------((....)).............)))))). ( -36.10)
>DroSec_CAF1 10231 96 - 1
GAGCGCAGUUAUUAGAACGGUGCUUGAUCGAUCCGAGAUCGAGAUCGAGUUCGAGCUGGAGCUGGA------------G------A------UGGACAGAGAAGAAAGAAAAGCAUCCCA
.(((.(((((....((((....(((((((.......))))))).....)))).)))))..)))((.------------(------(------((...................)))))). ( -26.91)
>DroSim_CAF1 13151 102 - 1
GAGCGCAGUUAUUAGAACGGUGCUUGAUCGAUCCGAGAUCGAGAUCGAGUUCGAGCUGGAGCUGGA------------GAUGGAGA------UGGACAGAGAAGAAAGAAAGGCAUCCCA
((((((.(((.....))).))))))..((((((((....)).)))))).(((.(((....))).))------------).(((.((------((...................))))))) ( -28.91)
>DroEre_CAF1 10146 120 - 1
GAGCGCAGUUAUUAGAACGGUGCUUGAUCGAUCCGAGAUCGAGCUCGAGCUCGAGAUUGAGUUGGAGAUGGAGAUCGAGAUGGAGAUGUUGAUGAACAGAAAAGAAAGAAAGGCAUCCCA
((((((.(((.....))).))))))..(((((((.(..((.(((((((........))))))).))..).).))))))..(((.((((((.....................))))))))) ( -36.10)
>consensus
GAGCGCAGUUAUUAGAACGGUGCUUGAUCGAUCCGAGAUCGAGAUCGAGUUCGAGCUGGAGCUGGA____________GAUGGAGA______UGGACAGAGAAGAAAGAAAGGCAUCCCA
((((((.(((.....))).))))))..((((((...))))))..((.(((((......))))).))...................................................... (-21.80 = -21.43 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:06 2006