Locus 4486

Sequence ID 3L_DroMel_CAF1
Location 12,974,740 – 12,974,860
Length 120
Max. P 0.565617
window7000

overview

Window 0

Location 12,974,740 – 12,974,860
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.33
Mean single sequence MFE -26.20
Consensus MFE -20.99
Energy contribution -20.95
Covariance contribution -0.04
Combinations/Pair 1.20
Mean z-score -1.40
Structure conservation index 0.80
SVM decision value 0.06
SVM RNA-class probability 0.565617
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12974740 120 - 23771897
AUAAAGGCGAAAAUUUUAAUUGCCGCAUUCGGUUGGCGAACCUCAAGUGAAUAAACCGAAUCAAAAAGCUAACAUAUUUCGGCAGCUUGGGGCAACAUCUUUAAAAUACUGAAGCAUUCA
......((....((((((((((((.(((((((((.....((.....)).....))))))))....(((((..(.......)..)))))).))))).....)))))))......))..... ( -25.00)
>DroSec_CAF1 92133 120 - 1
AUAAAGGCGAAAAUUUUAAUUGCCGCAUUCGGUUGGCAAACCUCAAGUGAAUAAACCGAAUCAAAAAGCUUGCAUAUUUCGGGAGCUUGGGGCAACAUCUUUAAAAUACUAAAGCAUUCA
......((....((((((((((((.(((((((((.....((.....)).....))))))))....((((((.(.......).))))))).))))).....)))))))......))..... ( -27.40)
>DroSim_CAF1 101833 120 - 1
AUAAAGGCGAAAAUUUUAAUUGCCGCAUUCGGUUGGCAAACCUCAAGUGAAUAAACCGAAUCAAAAAGCUAGCAUAUUUUGGGAGCUUGGGGCAGCAUCUUUAAAAUACUAAAGCAUUCA
......((....((((((((((((.(((((((((.....((.....)).....))))))))....(((((..((.....))..)))))).))))).....)))))))......))..... ( -26.10)
>DroEre_CAF1 97848 120 - 1
AUAAAGAUGAAAAUUUUAAUUGCCGCUUUCGGUUGGUAAACCUCAAGUGAAUAAACCAAUUCAAAUAGCUAGCAUAUUUCGAGAGCUUGAGGCAGCAUCUUUAAAGUACUAAAGCAUCCG
.((((((((.....((((...((((....))))...))))((((((((((((......))))(((((.......))))).....))))))))...))))))))................. ( -25.60)
>DroYak_CAF1 96036 120 - 1
AUAAAGAUGAACAUUUUAAUUGCCGCUUUCCGUUGGCAAACCUCAAGUGAAUAAACCGAAUCAAAUUGCUAGCAUAUUACGGGAGCUUGGGGCAGCAUCUUUAAAAUACUAAAGCAUCCA
.((((((((..........((((((........)))))).((((((((.......((((((.....((....)).))).)))..))))))))...))))))))................. ( -26.90)
>consensus
AUAAAGGCGAAAAUUUUAAUUGCCGCAUUCGGUUGGCAAACCUCAAGUGAAUAAACCGAAUCAAAAAGCUAGCAUAUUUCGGGAGCUUGGGGCAGCAUCUUUAAAAUACUAAAGCAUUCA
.((((((............((((((........)))))).((((((((.......(((((.................)))))..)))))))).....))))))................. (-20.99 = -20.95 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:35 2006