Locus 4485

Sequence ID 3L_DroMel_CAF1
Location 12,974,582 – 12,974,700
Length 118
Max. P 0.773742
window6999

overview

Window 9

Location 12,974,582 – 12,974,700
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.30
Mean single sequence MFE -26.49
Consensus MFE -23.33
Energy contribution -23.05
Covariance contribution -0.28
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.88
SVM decision value 0.54
SVM RNA-class probability 0.773742
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12974582 118 - 23771897
AACUAAAUGAGCCUGUGU--CUACGAUGCGGAGUGGUAUCCUUGCAAAUCCUGAGCAAAUAAACCAAGGAUGCCAACAAAGCAAAUAUUAACAAUGCCAAUAAAACCGGGCAGCACUCUG
..............((((--......(((....(((((((((((....................))))))))))).....)))...........((((..........)))))))).... ( -26.55)
>DroSec_CAF1 91973 120 - 1
AACUAAAUGAGCCUGUGUCUCUACGAUGCGGAGUGGUAUCCUUGCAAAUCCUGAGCAAAUAAACCAAGGAUGCCAACAAAGCAAAUAUUAACAAUGCCAAUAAAACCGGACAGCACUCUG
........(((.(((((((.....))).(((..(((((((((((....................))))))))))).....(((...........)))........))).))))..))).. ( -25.05)
>DroSim_CAF1 101675 118 - 1
AACUAAAUGAGCCUGUGU--CUACGAUGCGGAGUGGUAUCCUUGCAAAUCCUGAGCAAAUAAACCAAGGAUGCCAGCAAAGCAAAUAUUAACAAUGCCAAUAAAACCGGACAGCACUCUG
........(((..(((((--((....(((....(((((((((((....................))))))))))))))..(((...........)))..........))))).))))).. ( -24.05)
>DroEre_CAF1 97690 118 - 1
AACUAAAUGAGCCUGUGU--CUACGCUGUGGAGUGGUAUCCUUGCAAAUCCAGAGCAAAUAAACCAAGGAUGCCAACAAAGCAAAUAUUAACAAUGCCAAUAAAACCGGGCAGCACUCUG
..............((((--....(((.((...(((((((((((....................))))))))))).)).)))............((((..........)))))))).... ( -28.55)
>DroYak_CAF1 95878 118 - 1
AACUAAAUGAGCCUGUGU--CUGCAAUGUGGAGUGGUAUCCUUGCAAAUCCUGAGCAAAUAAACCAAGGAUGCCAACAAAGCAAAUAUUAACAAUGCCAAUAAAACCGGGCAGCACACUG
..............((((--((((..(((....(((((((((((....................))))))))))).....))).............((.........)))))).)))).. ( -28.25)
>consensus
AACUAAAUGAGCCUGUGU__CUACGAUGCGGAGUGGUAUCCUUGCAAAUCCUGAGCAAAUAAACCAAGGAUGCCAACAAAGCAAAUAUUAACAAUGCCAAUAAAACCGGGCAGCACUCUG
........(((.((((..........(((....(((((((((((....................))))))))))).....))).............((.........))))))..))).. (-23.33 = -23.05 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:34 2006