Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,973,649 – 12,973,769 |
Length | 120 |
Max. P | 0.991611 |
Location | 12,973,649 – 12,973,769 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.13 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -28.26 |
Energy contribution | -28.02 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.45 |
Structure conservation index | 0.82 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12973649 120 - 23771897 GGGCAUACAAGUCAGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGGAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCAGGCUCCUCAUGUGUGCUUUUCAU (((((((((.(..(((((.((..((((...................((((...(((((......)).)))...))))(((....)))))))..)).)))))...).)))))))))..... ( -35.20) >DroSec_CAF1 91035 120 - 1 GGGCAUACAAGUCGGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGCAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCUGGCUCCUCAUGUGUGCUUUUCAU (((((((.((((.(((....)))....)))).)))))))..((((((((....)))))))).....((((..((.((.((((.(((((........)))))..)))).)).))...)))) ( -33.30) >DroSim_CAF1 100737 120 - 1 GGGCAUACAAGUCGGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGCAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCAGGCUCCUCAUGUGUGCUUUUCAU (((((((((.(..(((((.((..((((.(..(..((.....((((((((....))))))))....))..)..)....(((....)))))))..)).)))))...).)))))))))..... ( -34.20) >DroEre_CAF1 96400 113 - 1 GGGCAUACAAGUCAGGCUGAGUUAAUUACUUUUGUGUCCUCAAGUCUGGGAUUACAGAUUUAAUUCAUGAUUGUCCAGGUGAAAGCCGAUUUUCUCAGGCUUUUCAUGUG--UGU----- ..(((((((.(..((.(((((..((((((..(..((.....(((((((......)))))))....))..)..))...(((....)))))))..))))).))...).))))--)))----- ( -34.60) >DroYak_CAF1 94958 115 - 1 GGGCAUACAAGUCAGGCUGAGUUAAUUACUUUUGUGUCCCCAAGUCUGGGAUUACAGAUUUAAUUCAUGAUUGUCCAGGUGAAAGCCGAUUUUCUCAGGCUUUUCAUGUGUGUGU----- ..(((((((.(..((((((((((((.....((((((..((((....))))..)))))).)))))))..((..(((..(((....))))))..))...)))))..).)))))))..----- ( -35.90) >consensus GGGCAUACAAGUCAGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGGAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCAGGCUCCUCAUGUGUGCUUUUCAU (((((((.((((...............)))).)))))))..(((((((......)))))))....(((((..(((..(((....)))((.....)).)))...)))))............ (-28.26 = -28.02 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:33 2006