Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,305,796 – 1,305,902 |
Length | 106 |
Max. P | 0.656823 |
Location | 1,305,796 – 1,305,902 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -35.88 |
Consensus MFE | -12.18 |
Energy contribution | -13.07 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.11 |
Mean z-score | -1.93 |
Structure conservation index | 0.34 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1305796 106 - 23771897 CGUCCUUGGGGGCCACCCCCUCCGCCCGGACCACCGCCGCCAGGACCUCCUCCUCCGCCGGGACCCUACUACAAUCCCUACUACAAUGGC--UA------------CAACUACUACGGCG .(((((.((.(((.......(((....))).....))).))))))).........((((((((...........))))........((..--..------------))........)))) ( -29.10) >DroPse_CAF1 10051 109 - 1 CCUCCAUGGGGGCCCCC------ACCAGGACCACCACCGCCACAGCCCCCG--UACUUUGGAGG-AUAC--CCAUCCUAUCCAGGAUGGGGUGGCGGCUAUCCGGGCGGCUAUCCUGGCG ...(((.((((((((((------....((....)).(((((((..((.(((--.....))).))-...(--(((((((....)))))))))))))))......))).)))).)))))).. ( -52.00) >DroSec_CAF1 9587 106 - 1 CGUCCUUGGGGGCCACCACCUCCGCCCGGACCACCGCCGCCAGGACCUCCUCCUCCUCCGGGGCCCUACUACAAUCCCUACUACAAUGGC--UA------------CAACUACUACGGCG .((((.((((((......))))))...))))...(((((((((((........))))..))((((......................)))--).------------.........))))) ( -27.75) >DroSim_CAF1 12507 106 - 1 CGUCCUUGGGGGCCACCACCUCCGCCCGGACCACCGCCGCCAGGACCUCCUCCUCCUCCGGGGCCCUACUACAAUCCCUACUACAAUGGC--UA------------CAACUACUACGGCG .((((.((((((......))))))...))))...(((((((((((........))))..))((((......................)))--).------------.........))))) ( -27.75) >DroEre_CAF1 9507 103 - 1 CGUCCUUGGGGCCCACCACCUCCACCCGGACCUCCUCCGCCAGGACCUCCUCC---UCCGGGCCCCUACUACAAUCCCUACUACAAUGGC--UU------------CAACUACUACGGCG ((((...(((((((............((((.....))))..((((.....)))---)..)))))))..........((.........)).--..------------..........)))) ( -26.70) >DroPer_CAF1 10030 109 - 1 CCUCCAUGGGGGCCCCC------ACCAGGACCACCACCGCCACAGCCCCCG--UACUUUGGAGG-AUAC--CCAUCCUAUCCAGGAUGGGGUGGCGGCUAUCCGGGCGGCUAUCCUGGCG ...(((.((((((((((------....((....)).(((((((..((.(((--.....))).))-...(--(((((((....)))))))))))))))......))).)))).)))))).. ( -52.00) >consensus CGUCCUUGGGGGCCACCACCUCCACCCGGACCACCGCCGCCAGGACCUCCUCCUCCUCCGGGGCCCUACUACAAUCCCUACUACAAUGGC__UA____________CAACUACUACGGCG .......((((.((.............)).)).))..(((((((.((((..........)))).))).........((.........))...........................)))) (-12.18 = -13.07 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:05 2006