Locus 4478

Sequence ID 3L_DroMel_CAF1
Location 12,968,105 – 12,968,225
Length 120
Max. P 0.942131
window6982

overview

Window 2

Location 12,968,105 – 12,968,225
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.67
Mean single sequence MFE -19.10
Consensus MFE -19.00
Energy contribution -19.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.99
SVM decision value 1.32
SVM RNA-class probability 0.942131
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12968105 120 + 23771897
AAACAAAAUCAAUCGAAAAUGUUUGCUGCACUCAAAUUAAAAACACAAACAAACCAAUUCCAGGCUAGUGUAAGAGUGAAUGUAAACAAAGUGGCAAAUAAAUUUGAUUUGUAUGCAACA
...................(((((((..(((((.........((((.......((.......))...))))..)))))...)))))))..((.(((.((((((...)))))).))).)). ( -19.00)
>DroSec_CAF1 85372 120 + 1
AAACAAAAUCAAUCGAAAAUGUUUGCUGCACUCAAAUUAAAAAUACAAACAAACCAAUUCCAGGCUAGUGUAAGAGUGAAUGUAAACAAAGUGGCAAAUAAAUUUGAUUUGUAUGCAACA
...................(((((((..(((((..........((((......((.......))....)))).)))))...)))))))..((.(((.((((((...)))))).))).)). ( -19.50)
>DroSim_CAF1 90285 120 + 1
AAACAAAAUCAAUCGAAAAUGUUUGCUGCACUCAAAUUAAAAACACAAACAAACCAAUUCCAGGCUAGUGUAAGAGUGAAUGUAAACAAAGUGGCAAAUAAAUUUGAUUUGUAUGCAACA
...................(((((((..(((((.........((((.......((.......))...))))..)))))...)))))))..((.(((.((((((...)))))).))).)). ( -19.00)
>DroEre_CAF1 91217 120 + 1
AAACAAAAUCAAUCGAAAAUGUUUGCUGCACUCAAAUUAAAAACACAAACAAACCAAUUCCAGGCUAGUGUAAGAGUGAAUGUAAACAAAGUGGCAAAUAAAUUUGAUUUGUAUGCAACA
...................(((((((..(((((.........((((.......((.......))...))))..)))))...)))))))..((.(((.((((((...)))))).))).)). ( -19.00)
>DroYak_CAF1 89358 120 + 1
AAACAAAAUCAAUCGAAAAUGUUUGCUGCACUCAAAUUAAAAACACAAACAAACCAAUUCCAGGCUAGUGUAAGAGUGAAUGUAAACAAAGUGGCAAAUAAAUUUGAUUUGUAUGCAACA
...................(((((((..(((((.........((((.......((.......))...))))..)))))...)))))))..((.(((.((((((...)))))).))).)). ( -19.00)
>consensus
AAACAAAAUCAAUCGAAAAUGUUUGCUGCACUCAAAUUAAAAACACAAACAAACCAAUUCCAGGCUAGUGUAAGAGUGAAUGUAAACAAAGUGGCAAAUAAAUUUGAUUUGUAUGCAACA
...................(((((((..(((((...((........))(((..((.......))....)))..)))))...)))))))..((.(((.((((((...)))))).))).)). (-19.00 = -19.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:17 2006