Locus 4473

Sequence ID 3L_DroMel_CAF1
Location 12,963,704 – 12,963,822
Length 118
Max. P 0.884697
window6973

overview

Window 3

Location 12,963,704 – 12,963,822
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.97
Mean single sequence MFE -28.30
Consensus MFE -27.78
Energy contribution -27.14
Covariance contribution -0.64
Combinations/Pair 1.08
Mean z-score -1.29
Structure conservation index 0.98
SVM decision value 0.93
SVM RNA-class probability 0.884697
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12963704 118 + 23771897
--AUGUUGUCCUCAAUGCGCUUUUCAAAUUCGCACAUAACCGGCUGUCAAAUCAGUUGUUGUCGGAAUGAAAUGAUAUGUCAAUCAAUCAUUUUCAUUUGAUCGAUUUCGGUGGGCGUAA
--.............((((((..(((((((((.(((....((((((......)))))).)))))((((((((((((.((.....)))))).))))))))....))))).))..)))))). ( -26.90)
>DroSec_CAF1 80956 118 + 1
--AUGUUGUCCUCAAUGCGCUUUUCAAAUUCGCACAUAACCGGCUGUCAAAUCAGUUGUUGUCGAAAUGAAAUGAUAUGUCAAUCAAUCAUUUUCAUUUGAUCGAUUUCGGUGGGCGUAA
--.....((((...(((.((...........)).))).((((((((......)))))(..((((((((((((((((.((.....)))))).)))))))...)))))..)))))))).... ( -27.20)
>DroSim_CAF1 85669 118 + 1
--AUGUUGUCCUCAAUGCGCUUUUCAAAUUCGCACAUAACCGGCUGUCAAAUCAGUUGUUGUCGGAAUGAAAUGAUAUGUCAAUCAAUCAUUUUCAUUUGAUCGAUUUCGGUGGGCGUAA
--.............((((((..(((((((((.(((....((((((......)))))).)))))((((((((((((.((.....)))))).))))))))....))))).))..)))))). ( -26.90)
>DroEre_CAF1 86886 118 + 1
--AUAUUGUCCUCGGUGCGCUUUUCAAAUUCGCACAUAACCGACUGUCAAAUCAGUUGUUGUCGAAAUGAAAUGAUAUGUCAAUCAAUCAUUUUCAUUUGAUCGAUUUCGGUGGGCGUAA
--.....((((...(((((...........)))))...((((((((......)))))(..((((((((((((((((.((.....)))))).)))))))...)))))..)))))))).... ( -31.10)
>DroYak_CAF1 84886 120 + 1
ACAUAUUGUCCUCGAUGCGCUUUUCAAAUUCGCACAUAACCGACUGUCAAAUCAGUUGUUGUCGAAAUGAAAUGAUAUGUCAAUCAAUCAUUUUCAUUUGAUCGAUUUCGGUGGGCGUAA
.......((((((((..((....(((((((((.(((....((((((......)))))).)))))))..((((((((.((.....))))))))))..))))).))...)))).)))).... ( -29.40)
>consensus
__AUGUUGUCCUCAAUGCGCUUUUCAAAUUCGCACAUAACCGGCUGUCAAAUCAGUUGUUGUCGAAAUGAAAUGAUAUGUCAAUCAAUCAUUUUCAUUUGAUCGAUUUCGGUGGGCGUAA
.......((((...(((.((...........)).))).((((((((......)))))(..((((((((((((((((.((.....)))))).)))))))...)))))..)))))))).... (-27.78 = -27.14 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:08 2006