Locus 4472

Sequence ID 3L_DroMel_CAF1
Location 12,963,544 – 12,963,664
Length 120
Max. P 0.990538
window6972

overview

Window 2

Location 12,963,544 – 12,963,664
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.29
Mean single sequence MFE -35.90
Consensus MFE -30.20
Energy contribution -29.72
Covariance contribution -0.48
Combinations/Pair 1.20
Mean z-score -2.17
Structure conservation index 0.84
SVM decision value 2.22
SVM RNA-class probability 0.990538
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12963544 120 - 23771897
UCGUUGAAGUUUAGCAGGAUUUGCGAACUUGUGAUUGGGUUAUUGACUUAUGACAUGGAGUGCUCUCAUUUCCAUGGGCACUCGUAGUCACCCCGCAAGUUGUGCACAUUAUUUGCAUUC
.............(((.((((((((.....(((((((.(((((......)))))...((((((((..........)))))))).)))))))..)))))))).)))............... ( -37.50)
>DroSec_CAF1 80800 118 - 1
UCGUUGAAGUUUAGCAGGAUUUGCGAACUUGUGAUUGGGUUAUUGACUUAUGACAUG-AGUGCUCUCAUUUCCAUGGGCACUCGUAGUCACCCCGCAAG-UGUGCACAUUAUUUGCAUUC
.............(((.(((.((((.(((((((..((((((...))))))(((((((-(((((((..........)))))))))).))))...))))))-).)))).)))...))).... ( -38.90)
>DroSim_CAF1 85513 118 - 1
UCGUUGAAGUUUAGCAGGAUUUGCGAACUUGUGAUUGGGUUAUUGACUUAUGACAUG-AGUGCUCUCAUUUCCAUGGGCACUCGUAGUCACCCCGCAAG-UGUGCACAUUAUUUGCAUUC
.............(((.(((.((((.(((((((..((((((...))))))(((((((-(((((((..........)))))))))).))))...))))))-).)))).)))...))).... ( -38.90)
>DroEre_CAF1 86729 119 - 1
UCGUUGAAGUUUAGCAGGAUUUGCGAACUUGUGAUUGGGUUAUCGACUCAUGAUAUG-AGUGCUCUCAUUUCCAGGAGCACUUUCAGUCACCCUGCAAAUGGUGCACAUAAUUUGCAUUC
......((((((.((((...))))))))))((((((((..(((((.....))))).(-((((((((........)))))))))))))))))..(((((((.((....)).)))))))... ( -33.30)
>DroYak_CAF1 84729 119 - 1
UCGUUGAAGUCUAGCAGGAUUUGUGAACUUGUGAUUGGGUUAUUGACUCAUGACAUA-AGUGCUCUCAUUUCUAGAAGCACUCGCAGUCACCCUGCAAAUUGUGCACAUAAUUUGCAUUC
..((((.....))))(((..(((((((((((((..((((((...))))))...))))-)))(((.((.......)))))..))))))....)))(((((((((....))))))))).... ( -30.90)
>consensus
UCGUUGAAGUUUAGCAGGAUUUGCGAACUUGUGAUUGGGUUAUUGACUUAUGACAUG_AGUGCUCUCAUUUCCAUGGGCACUCGUAGUCACCCCGCAAGUUGUGCACAUUAUUUGCAUUC
.............(((.((((((((.....(((((((.(((((......)))))....(((((((..........)))))))..)))))))..)))))))).)))............... (-30.20 = -29.72 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:07 2006