Locus 447

Sequence ID 3L_DroMel_CAF1
Location 1,304,225 – 1,304,341
Length 116
Max. P 0.800390
window654

overview

Window 4

Location 1,304,225 – 1,304,341
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 78.46
Mean single sequence MFE -19.84
Consensus MFE -12.77
Energy contribution -13.10
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.64
SVM decision value 0.61
SVM RNA-class probability 0.800390
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1304225 116 - 23771897
AAAUGAAUCGUAACUUCUUUAAGAGAUCGUAUCUUAUACAUCUUUAAAGAACAAUGUCUGAAUGAAUCCAUUCACUAGGUAAGACCAGGUCAUUCUCUACUCUUCCAAGUGACACA
..............(((((((.(((((.((((...))))))))))))))))...((((.(((((....)))))(((.((.((((..(((......)))..)))))).))))))).. ( -23.70)
>DroSec_CAF1 8043 93 - 1
AAAUGAAUUGUAACUUCCUUAAGAGAUACCAUCUUAUGCAUAU-----------------------UACGUUCACUAGGUAAGCCCAGGUAAUUCUCUGCUCUUCCAAGUGACACA
.........((((......(((((.......)))))......)-----------------------)))(((((((.((.(((..((((......))))..))))).))))).)). ( -18.10)
>DroSim_CAF1 10949 93 - 1
AAAUGAAUUGUAACUUCCUUAAGAGAUCCCAUCUUAUGCAUAU-----------------------UCCGUUCACUAGGUAAGCCCAGGUAAUUCUCUGCUCUUCCAAGUGACACA
....((((((((.......(((((.......))))))))).))-----------------------)).(((((((.((.(((..((((......))))..))))).))))).)). ( -17.71)
>consensus
AAAUGAAUUGUAACUUCCUUAAGAGAUCCCAUCUUAUGCAUAU_______________________UCCGUUCACUAGGUAAGCCCAGGUAAUUCUCUGCUCUUCCAAGUGACACA
...................(((((.......)))))...................................(((((.((.(((..((((......))))..))))).))))).... (-12.77 = -13.10 +   0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:04 2006