Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,304,225 – 1,304,341 |
Length | 116 |
Max. P | 0.800390 |
Location | 1,304,225 – 1,304,341 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -19.84 |
Consensus MFE | -12.77 |
Energy contribution | -13.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.64 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1304225 116 - 23771897 AAAUGAAUCGUAACUUCUUUAAGAGAUCGUAUCUUAUACAUCUUUAAAGAACAAUGUCUGAAUGAAUCCAUUCACUAGGUAAGACCAGGUCAUUCUCUACUCUUCCAAGUGACACA ..............(((((((.(((((.((((...))))))))))))))))...((((.(((((....)))))(((.((.((((..(((......)))..)))))).))))))).. ( -23.70) >DroSec_CAF1 8043 93 - 1 AAAUGAAUUGUAACUUCCUUAAGAGAUACCAUCUUAUGCAUAU-----------------------UACGUUCACUAGGUAAGCCCAGGUAAUUCUCUGCUCUUCCAAGUGACACA .........((((......(((((.......)))))......)-----------------------)))(((((((.((.(((..((((......))))..))))).))))).)). ( -18.10) >DroSim_CAF1 10949 93 - 1 AAAUGAAUUGUAACUUCCUUAAGAGAUCCCAUCUUAUGCAUAU-----------------------UCCGUUCACUAGGUAAGCCCAGGUAAUUCUCUGCUCUUCCAAGUGACACA ....((((((((.......(((((.......))))))))).))-----------------------)).(((((((.((.(((..((((......))))..))))).))))).)). ( -17.71) >consensus AAAUGAAUUGUAACUUCCUUAAGAGAUCCCAUCUUAUGCAUAU_______________________UCCGUUCACUAGGUAAGCCCAGGUAAUUCUCUGCUCUUCCAAGUGACACA ...................(((((.......)))))...................................(((((.((.(((..((((......))))..))))).))))).... (-12.77 = -13.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:04 2006