Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,961,585 – 12,961,705 |
Length | 120 |
Max. P | 0.827099 |
Location | 12,961,585 – 12,961,705 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -32.06 |
Energy contribution | -32.46 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.92 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12961585 120 - 23771897 GCUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG ((((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........))))))..... ( -38.90) >DroSec_CAF1 78835 120 - 1 ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCGAAGGCUUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG .(((((.....((..((....((((((..(((((((((.(....((....))..).)))))))(((....)))..........)).....))))))...))...))...)))))...... ( -30.60) >DroSim_CAF1 83550 120 - 1 ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG .(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... ( -34.70) >DroEre_CAF1 84856 120 - 1 ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAGCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCAAAAG .(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... ( -34.70) >DroYak_CAF1 82747 120 - 1 ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAGGUCUGCCACAGCAAAAG .(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... ( -34.70) >consensus ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG .(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... (-32.06 = -32.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:02 2006