| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,960,811 – 12,960,921 |
| Length | 110 |
| Max. P | 0.993125 |
| Location | 12,960,811 – 12,960,921 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -45.34 |
| Consensus MFE | -27.32 |
| Energy contribution | -29.92 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.60 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12960811 110 - 23771897 GCCACUUUCCCCGCAU-------UUUCUCCGGAAAAACCGUGCUCCUGAUCUCAGUGGGGCAUCGGUUGGGGAGGAUGGGAAAGCCGGCUCUGUGUGCUGGCAUCCGGGGAUACUU---A .......(((((.(((-------((((((((.....((((((((((..........)))))).)))))))))))))))(((..((((((.......)))))).)))))))).....---. ( -50.90) >DroSec_CAF1 78018 105 - 1 -----AUUCCCCGCAU-------UUUCCCCGGAAAAGCAGUGCUCCUGAUCUCACUGGGUUAUCGGUUGGGGAGGAUGGGAAAGCCGGCUCUGUCUGCUGGCAUCCGGGUAUACUU---A -----....(((.(((-------((((((((((....(((.....)))...))(((((....))))))))))))))))(((..((((((.......)))))).)))))).......---. ( -39.30) >DroSim_CAF1 82769 108 - 1 -----AUUCCCCGCAU-------UUUCCCCGGAAAAGCCGUGCUCCUGAUCUCAGUGGGGCAUCGGUUGGGGAGGAUGGGAAAGCCGGCUCUGUCUGCUGGCAUCCGGGUAUACUUAUCA -----....(((.(((-------((((((((.....((((((((((..........)))))).)))))))))))))))(((..((((((.......)))))).))))))........... ( -49.10) >DroEre_CAF1 84032 93 - 1 GCCUCGGACCCCACAU-------UUUCCCCGGCAGAGCAGUGCUCCAGAUCUCAGUGGGGCAUCGGGGA-----------------GUCUCUGUCUGCUCGCAUCCGGGGAUACUU---A ................-------..(((((((..(((((((((((((........))))))).(((((.-----------------..))))).))))))....))))))).....---. ( -36.10) >DroYak_CAF1 81885 117 - 1 GCCUCGGAUCCCACAUUCCACAAUUUCCCCGGAAAAGCCCUGCUCCAGAUCUCAGUGGGGCAUCGGGUAUGGAGGAUGGGAAAACCGGCUCUGUCUGCUGGCAUCCGGGGAUACUU---A .((((((((((((..(((((...((((....)))).(((((((((((........)))))))..)))).)))))..)))))...(((((.......)))))..)))))))......---. ( -51.30) >consensus GCC_CAUUCCCCGCAU_______UUUCCCCGGAAAAGCCGUGCUCCUGAUCUCAGUGGGGCAUCGGUUGGGGAGGAUGGGAAAGCCGGCUCUGUCUGCUGGCAUCCGGGGAUACUU___A .........................((((((((..(((((((((((..........)))))).)))))...............((((((.......)))))).))))))))......... (-27.32 = -29.92 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:00 2006