Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,960,229 – 12,960,345 |
Length | 116 |
Max. P | 0.940402 |
Location | 12,960,229 – 12,960,345 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.36 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -20.46 |
Energy contribution | -20.70 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.52 |
Structure conservation index | 0.90 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12960229 116 + 23771897 ----CAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ----..((((..........))))...(((((.......((((((.......)))))).........(((((...)))))....))))).......((((((.....))))))....... ( -23.90) >DroSec_CAF1 77448 116 + 1 ----CAGCUGUUUAGGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACGAAAUGCAAAACAUUUUAAAAUUC ----..((.((((...((...((((..((((((((....)))))))).....(((...((....)).(((((...)))))....))))))).))...))))))................. ( -24.60) >DroSim_CAF1 82199 116 + 1 ----CAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ----..((((..........))))...(((((.......((((((.......)))))).........(((((...)))))....))))).......((((((.....))))))....... ( -23.90) >DroEre_CAF1 83456 120 + 1 AAAUGAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAACAUAAUUAAUGGUUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ....((((.(((...((((..(((...((((((((....))))))))...(((.....)))........)))...))))....)))..))))....((((((.....))))))....... ( -22.80) >DroYak_CAF1 81318 120 + 1 AAAUCAUUUGAUUACGGAUUUAGCUAUCAGGCAAAACUUUUUGACUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC .((((....))))..((((((......(((((.............(((.....)))...........(((((...)))))....))))).......((((((.....)))))).)))))) ( -18.80) >consensus ____CAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ...............((((((......(((((.......((((((.......)))))).........(((((...)))))....))))).......((((((.....)))))).)))))) (-20.46 = -20.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006