Locus 4462

Sequence ID 3L_DroMel_CAF1
Location 12,957,679 – 12,957,798
Length 119
Max. P 0.911130
window6954

overview

Window 4

Location 12,957,679 – 12,957,798
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.32
Mean single sequence MFE -30.66
Consensus MFE -29.38
Energy contribution -29.22
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.47
Structure conservation index 0.96
SVM decision value 1.08
SVM RNA-class probability 0.911130
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12957679 119 - 23771897
-ACACUGUACAAAAGUUUAGAAAUAAUUAGUAAACUUUUAAUUGGAAACUAGUACGCAAUGGCGAAUCGAUUCUCUGCCAAACGCUUCGGCCCACUCCAUUGAGUGGCGGUCGAUUUUGG
-.....(((((((((((((...........)))))))))....(....)..))))((....))(((((((....(((((....((....))..((((....))))))))))))))))... ( -30.80)
>DroSec_CAF1 74902 119 - 1
-ACACUGUACAAAAGUUUAGAAAUAAUUAGUAAACUUUUAAUUGGAAACUAGUACGCAAUGGCAAAUCGAUUCUCUGCCACACGCUUCGGCCCACUCCAUUGAGUGGCGGUCGAUUUUGG
-.....(((((((((((((...........)))))))))....(....)..))))((....))(((((((....(((((((..((....)).((......)).))))))))))))))... ( -30.80)
>DroSim_CAF1 79651 119 - 1
-ACACUGUACAAAAGUUUAGAAAUAAUUAGUAAACUUUUAAUUGGAAACUAGUACGCAAUGGCGAAUCGAUUCUCUGCCACACGCUUCGGCCCACUCCAUUGAGUGGCGGUCGAUUUUGG
-.....(((((((((((((...........)))))))))....(....)..))))((....))(((((((....(((((((..((....)).((......)).))))))))))))))... ( -31.20)
>DroEre_CAF1 81004 119 - 1
-ACACUGUACAAAAGUUUAGAAAUAAUUAGUAAACUUUUAAUUGGAAACUAGUACGCAAUGGCGAAUCGAUUCUCUGCCACACCCUCCGGCCCACUCCAUUGAGUGGCGGUCGAUUUUGG
-.....(((((((((((((...........)))))))))....(....)..))))((....))(((((((((....(((.........)))((((((....)))))).)))))))))... ( -29.30)
>DroYak_CAF1 78807 120 - 1
CACACUGUACAAAAGUUUAGAAAUAAUUAGUAAACUUUUAAUUGGAAACUAGUACGCAAUGGCGAAUCGAUUCUCUGCCACACGCUUCGGCCCACUCCAUUGAGUGGCGGUCGAUUUUGG
......(((((((((((((...........)))))))))....(....)..))))((....))(((((((....(((((((..((....)).((......)).))))))))))))))... ( -31.20)
>consensus
_ACACUGUACAAAAGUUUAGAAAUAAUUAGUAAACUUUUAAUUGGAAACUAGUACGCAAUGGCGAAUCGAUUCUCUGCCACACGCUUCGGCCCACUCCAUUGAGUGGCGGUCGAUUUUGG
......(((((((((((((...........)))))))))....(....)..))))((....))(((((((((....(((.........)))((((((....)))))).)))))))))... (-29.38 = -29.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:49 2006