Locus 4461

Sequence ID 3L_DroMel_CAF1
Location 12,957,434 – 12,957,554
Length 120
Max. P 0.905490
window6953

overview

Window 3

Location 12,957,434 – 12,957,554
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.45
Mean single sequence MFE -22.59
Consensus MFE -19.80
Energy contribution -20.40
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.88
SVM decision value 1.04
SVM RNA-class probability 0.905490
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12957434 120 + 23771897
CCCAACAAGGCACGAAGUGCAUAUUUCGUUAGGAAAUCCUUGUAAGCCACAAAGACUUGAAAAAUUUGUGCAGAACCAACCACAAAUUUCAUGGGAAUAAAAAUGCAACGCAAUAAACAG
((((....((((((((((....))))))).(((....))).....))).........((((..(((((((..........)))))))))))))))........(((...)))........ ( -23.60)
>DroSec_CAF1 74655 116 + 1
CCCAACAAGGCACGAAGUGCAUAUUUCGUUAGGAAAUCCUUGUAAGCCACAAAGACUUGAAAAAUUUGUGCAGAAC----CACAAAUUUCAUGCGAAUAAAAAUGCAACGCAAUAAACAG
........((((((((((....))))))).(((....))).....))).........((((..(((((((......----)))))))))))((((.............))))........ ( -21.32)
>DroSim_CAF1 79404 116 + 1
CCCAACAAGGCACGAAGUGCAUAUUUCGUUAGGAAAUCCUUGUAAGCCACAAAGACUUGAAAAAUUUGUACAGAAC----CACAAAUUUCAUGCGAAUAAAAAUGCAACGCAAUAAACAG
........((((((((((....))))))).(((....))).....))).........((((..((((((.......----.))))))))))((((.............))))........ ( -18.62)
>DroEre_CAF1 80736 116 + 1
CCCAACAAGGCACGAAGUGCAUAUUUCGUUAGGAAAUCCUUGUAAGCCACAAAGACUUGAAAAAUUUGUGCAGAAC----CACAAAUUUCAUGGGAAUAAAAAUGCAACGCAAUAAACAG
((((....((((((((((....))))))).(((....))).....))).........((((..(((((((......----)))))))))))))))........(((...)))........ ( -24.70)
>DroYak_CAF1 78562 116 + 1
CCCAACAAGGCACGAAGUGCAUAUUUCGUUAGGAAAUCCUUGUAAGCCACAAAGACUUGAAAAAUUUGUGCAGAGC----CACAAAUUUCAUGGGAAUAAAAAUGCAACGCAAUAAACAG
((((....((((((((((....))))))).(((....))).....))).........((((..(((((((......----)))))))))))))))........(((...)))........ ( -24.70)
>consensus
CCCAACAAGGCACGAAGUGCAUAUUUCGUUAGGAAAUCCUUGUAAGCCACAAAGACUUGAAAAAUUUGUGCAGAAC____CACAAAUUUCAUGGGAAUAAAAAUGCAACGCAAUAAACAG
((((....((((((((((....))))))).(((....))).....))).........((((..(((((((..........)))))))))))))))........(((...)))........ (-19.80 = -20.40 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:48 2006