Locus 4460

Sequence ID 3L_DroMel_CAF1
Location 12,957,274 – 12,957,394
Length 120
Max. P 0.681833
window6952

overview

Window 2

Location 12,957,274 – 12,957,394
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.10
Mean single sequence MFE -33.64
Consensus MFE -30.10
Energy contribution -29.94
Covariance contribution -0.16
Combinations/Pair 1.10
Mean z-score -1.24
Structure conservation index 0.89
SVM decision value 0.31
SVM RNA-class probability 0.681833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12957274 120 - 23771897
GGGGGCGGGGGAUUUCCCAGCCAGUGUAUAUGUGUGAGUGUUUGUGAACGCUUGUAAAUUAGCCGAGGCGAAAGCAAGUUCCAUUUGCAAUACUGUGCGUAUACGUAAUUUAACUGAAAG
...(((..(((....))).)))...(((((((..(.((((((.(..((.((((((......((....))....))))))....))..))))))))..)))))))................ ( -35.90)
>DroSec_CAF1 74500 116 - 1
--GGGCGGGGGAUUUCCCAGCCAGUGUAUAUGUGU--GUGUUUGUGAACGCUUGUAAAUUAGCCGAGGCGAAAGCAGUUUCCAUUUGCAAUACUGUGCGUAUACGUAAUUUAACUGAAAG
--.(((..(((....))).)))...(((((((..(--(((((....)))))((((((((.(((....((....)).)))...))))))))....)..)))))))................ ( -34.00)
>DroSim_CAF1 79248 116 - 1
--GGGCGGGGGAUUUCCCAGCCAGUGUAUAUGUGU--GUGUUUGUGAACGCUUGUAAAUUAGCCGAGGCGAAAGCAGUUUCCAUUUGCAAUACUGUGCGUAUACGUAAUUUAACUGAAAG
--.(((..(((....))).)))...(((((((..(--(((((....)))))((((((((.(((....((....)).)))...))))))))....)..)))))))................ ( -34.00)
>DroEre_CAF1 80581 115 - 1
---GGCGGGGGAUUUCCCAGCAAAUGUAUAUGUG--UGCGUUUGUGAACGCUUGUAAAUUAGCCGAGGCGAAAGCAGUUUCCAUUUGCAAUACUGUGCGUAUACGUAAUUUAACUGAAAG
---.((..(((....))).))..(((((((((..--((((((....)))))((((((((.(((....((....)).)))...))))))))....)..))))))))).............. ( -34.20)
>DroYak_CAF1 78404 118 - 1
--GGGCGGGGGAUUUUCCAGCAAAUGUAUAUGUGUGUGUGUUUGUGAACGCUUGUAAAUUAGCCGAGGCGAAAGCAGUUUCCAUUUGCAAUACUGUGCGUAUACGUAAUUUAACUGAAAG
--..((...((.....)).))..(((((((((..(((((((.((..((((((........)))....((....)).)))..))...)).)))).)..))))))))).............. ( -30.10)
>consensus
__GGGCGGGGGAUUUCCCAGCCAGUGUAUAUGUGU__GUGUUUGUGAACGCUUGUAAAUUAGCCGAGGCGAAAGCAGUUUCCAUUUGCAAUACUGUGCGUAUACGUAAUUUAACUGAAAG
...(((..(((....))).))).((((((((((....(((((....)))))((((((((........((....)).......))))))))......)))))))))).............. (-30.10 = -29.94 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:47 2006